PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00234.1.g00070.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 280aa MW: 30915.7 Da PI: 5.5893

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00234.1.g00070.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	57.6	2.5e-18	240	278	1	38
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k++ Zpz_sc00234.1.g00070.1.sm.mkhc 240 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAaGCPVRKQM 278 58*************************99****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-18	225	278	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-16	233	278	IPR003657	WRKY domain
PROSITE profile	PS50811	19.451	235	280	IPR003657	WRKY domain
SMART	SM00774	1.8E-9	240	280	IPR003657	WRKY domain
Pfam	PF03106	1.5E-15	241	278	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSKGEEQLGS HDEQLKDEVC SLGGRDNSEM ELASNRTPSN VKAQNKVIQE DKLASTRAEM 60 DEVREENERL KKMLSRIAED YRSLQMHFQE VIQQEQAKKP VDPMATSRTN NEEPGFISLS 120 LRTSTSMNKK EEKSSIVLEG KGREELTTIK ESGLSLGLTD CKVGAASSGK IQPNVLTLSP 180 EGSSEDATDD GIETTDQWPS SKTQKNLRSD GAEVEDDLGP LPPVKKARVS VRARCDAPTM 240 NDGCQWRKYG QKISKGNPCP RAYYRCTVAA GCPVRKQMAC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00234.1.g00070.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811456.1	1e-130	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-60	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2S3HLX2	1e-129	A0A2S3HLX2_9POAL; Uncharacterized protein
STRING	Pavir.Da02223.1.p	1e-118	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-49	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]