PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00234.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 508aa    MW: 53991.6 Da    PI: 8.4456
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00234.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-091081541455
                           AP2  14 rWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   r++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Zpz_sc00234.1.g00100.1.am.mk 108 RFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 154
                                   78999999877744555447*************************98 PP
2AP251.91.9e-16197248155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Zpz_sc00234.1.g00100.1.am.mk 197 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 248
                                   89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-12102162IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-12102163IPR016177DNA-binding domain
PROSITE profilePS5103217.635102162IPR001471AP2/ERF domain
SMARTSM003805.0E-17102168IPR001471AP2/ERF domain
PfamPF008473.7E-6107154IPR001471AP2/ERF domain
PfamPF008477.0E-12197248IPR001471AP2/ERF domain
CDDcd000185.06E-24197258No hitNo description
SuperFamilySSF541719.81E-18197258IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-18198257IPR001471AP2/ERF domain
PROSITE profilePS5103218.953198256IPR001471AP2/ERF domain
SMARTSM003801.6E-26198262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MPRDQPKAMM LSRLWHHLAS THANPCRPLP TLLVKDELNG IGGGGGRGAL YCTAAPRGGG  60
GDGPMKSVKR RKREPSTAAV GKELAGGDKS GSGGNAAKRS SRFRGVSRFE AHLWDKGTWN  120
PTQKKKGKQV YLGAYNEEEA AARAYDLAAL KYWGPSTYTN FPVVDYEKEL KVMQNVSKEE  180
YLASIRRKSN GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYS TQEEAARAYD  240
IAAIEYRGIN AVTNFDLSSY IRWLKPAGAG AVEDGNSGGT PTSGVKPAIL PSLCLQGVHQ  300
AAGSLLQHTH GAAAMLQGGS LAGLDDVGSA YASGPRLTAV CGRPTGALTG LDDVSSVYTG  360
GPSPTAVCGR PSPSSSATAL SLLLRSSMFQ ELVARNADAA AQAEQLPAAA EVDHVTASDV  420
EADIKPALEE PPTGETGDAL YDAGADDAFA CSMYELDDSF ACMQQSFWNY CLYVPNGPFL  480
RSDKVDCPSV SRVPHAAQSM AKSCNCVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571KSVKRRK
2120128PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00234.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0599894e-68EF059989.1 Brachypodium sylvaticum hypothetical protein (57h21.1), methyl sulfoxide reductase (57h21.2), hypothetical protein (57h21.3), oxidoreductase (57h21.4), auxin efflux carrier (57h21.6), CCR4 associated factor-like protein (57h21.7), ribosomal subunit 8E protein (57h21.8), expressed protein (57h21.9), expressed protein (57h21.10), acid phosphatase (57h21.11), polygalacturonase inhibitor (57h21.12), proteasome (57h21.13), leucine carboxyl methyl transferase (57h21.14), homeobox (57h21.15), serine threonine kinase (57h21.16), hypothetical protein (57h21.17), GTP binding protein (57h21.18), zinc carboxy peptidase (57h21.20), DNA repair protein (57h21.21), coatomer complex subunit (57h21.22), sulfate transporter (57h21.23), hypothetical protein (57h21.24), hypothetical protein (57h21.25), hypothetical protein (57h21.26), acyl-ATP thioesterase (57h21.27), hypothetical protein (57h21.28), hypothetical protein (57h21.29), superoxide dismutase (57h21.30), expressed protein (57h21.31), protein kinase (57h21.32), early nodulin protein (57h21.33), early nodulin protein (57h21.34), hypothetical protein (57h21.36), hypothetical protein (57h21.37), and expressed protein (57h21.38) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681620.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Y0Z50.0K3Y0Z5_SETIT; Uncharacterized protein
STRINGSi007857m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-75AP2 family protein