PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00236.1.g00450.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 262aa MW: 28469.8 Da PI: 6.6736

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00236.1.g00450.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.7e-06	118	149	3	37
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK 37 + h +ErrR +++ + f L +l+P + +++K Zpz_sc00236.1.g00450.1.sm.mk 118 QEHVVAERRRHEKMQQQFVALATLVPDL---TKEK 149 57999**********************8...4444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-5	118	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-6	119	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MYQHEEQPGM LAHPPPEQQR YYTSPQAMAP PNPYHPSPHS QSSAFPNFGA GHALPTPPFR 60 GVAVKNEAGQ PSSSTSNSLS FGGQQTRTLS FSAGDWTDGT EAVQQVLERR NRTHLNTQEH 120 VVAERRRHEK MQQQFVALAT LVPDLTKEKV RTLEEQSATG ASDPTVFESK CRISSDNVDA 180 SWPNASSSAG AMSGYVPTVE ASIHGNTVLV KICCKEGRGV LVMVFSEIEN HGLSILNTSV 240 LPFTDSCLSI TITAKARLLV LD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00236.1.g00450.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021316601.1	8e-88	transcription factor bHLH18
Refseq	XP_021316605.1	8e-88	transcription factor bHLH18
TrEMBL	A0A3L6SAV4	2e-92	A0A3L6SAV4_PANMI; Uncharacterized protein
STRING	OB03G19470.1	1e-78	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	6e-24	bHLH family protein