PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00237.1.g00630.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 220aa MW: 24124.8 Da PI: 9.917

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00237.1.g00630.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.9	8.3e-34	114	170	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh+hA++R+RgsgGrF Zpz_sc00237.1.g00630.1.sm.mkhc 114 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHQHAMKRARGSGGRF 170 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.5E-39	112	173	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.404	113	173	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-29	115	170	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.5E-25	116	138	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	118	138	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.5E-25	147	170	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MPPPHRSENG TIMIQFGHQM PDYDSSATQS TSGSQQEVSG MSEGSLNEHN DRSGNLNGYT 60 KSDENKMLSA LSLGNPEIAH AHQKSDRSQS YMHHQIVGMV PSSRVPLPIE PAAEEPIYVN 120 AKQYHAILRR RQLRAKLEAE NKLVKSRKPY LHESRHQHAM KRARGSGGRF LNTKQQAEAT 180 GGCGGSSDAH RAPANNGGLF AKHEHGLPPG DLRYHPRGGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-24	114	176	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00237.1.g00630.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985516.1	1e-124	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q9LVJ7	2e-39	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	K4AEG2	1e-122	K4AEG2_SETIT; Uncharacterized protein
STRING	Si037269m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	1e-33	nuclear factor Y, subunit A5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]