PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00240.1.g00210.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 314aa    MW: 35183.7 Da    PI: 4.2976
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00240.1.g00210.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.83.3e-072372681445
                                     HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
                        Homeobox  14 eLeelFeknrypsaeereeLAkklgLterqVk 45 
                                     +L e+F+ ++yps+  +e LA++lg+t rqVk
  Zpz_sc00240.1.g00210.1.sm.mkhc 237 RLLEHFKTEQYPSRVVKESLAEELGITSRQVK 268
                                     68899**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-5236268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-6236268IPR009057Homeodomain-like
CDDcd000865.99E-5236268No hitNo description
PfamPF000461.5E-4237268IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTDSRICREC CQDGLEKIRP EKELERAKGE ILRCKLRIRE VFQNLDSLLA KGKIDKSLFD  60
SDGEIACEDS LREMKDGCAR HASDLSIEDS WEKVFPEAAA LSNGSKQDDT FNLPSDDSED  120
GDFDPDMTEG QMASKEDGSS EEGEDGSSEE DEDEGSDSDD SNFLTSSDDS EAVTDKKKVD  180
DLGLPSEDSE DDDYDPAAMK KNGLEMAHQK RAAKNQVMLK PIYLQGKALE LGLRPKRLLE  240
HFKTEQYPSR VVKESLAEEL GITSRQVKDS EDMVMDKPDV CSKETENEDA KCDETRKKAV  300
HWELKKKKMG SGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00240.1.g00210.1.sm.mkhc
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569804.13e-43homeobox protein HAZ1
TrEMBLA0A0E0A7463e-43A0A0E0A746_9ORYZ; Uncharacterized protein
STRINGOGLUM06G08790.15e-44(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3208544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-18Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain