PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00241.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 389aa    MW: 41866.5 Da    PI: 7.8159
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00241.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.8e-181191732479
                      trihelix  24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                   g+++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e e++  ++ ss +
  Zpz_sc00241.1.g00170.1.am.mk 119 GAAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIRECERGA-DGPSSFW 173
                                   45899****************************************986.4444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-9117167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRSLASRPCD CWEADWWRGP LPRSSIPTVH AHREVSGSHA SSSSFVSSCI AVAGLGVKAV  60
SCLIGGRRRG ERARAAAAAV DAAGDTGAHR GEARGGAERA RARARAGTEQ GXXXADGGGA  120
AEPTKWAAVA EYCRRHGVDR GPVQCRKRWS NLAGDYKKIR ECERGADGPS SFWAMRSDAR  180
KERRLPGFFD REVYDILEGR GAGGSNNAVV PRVDLELEEG KERQRPVAVV DHSGARAATD  240
GLFSSSSDED DDDDHDEAAT PPAVPTPALP PAQVFVPDSE KTTEAPRIER SEQGTSKRKG  300
LDGLTDDSPV QGQQKRQRNG DEGSGRATTD LQGQLLHILD RSGRMVATQL EAQNINSRLD  360
REQRKDQASS LLGVLGKMAD ALYRIADKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00241.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826049.11e-114trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2S3I6631e-113A0A2S3I663_9POAL; Uncharacterized protein
STRINGSi010590m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-52Trihelix family protein