PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00241.1.g00320.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 260aa    MW: 27359.7 Da    PI: 4.4143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00241.1.g00320.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183687156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Zpz_sc00241.1.g00320.1.sm.mk 36 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 87
                                  5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.95E-293695No hitNo description
PROSITE profilePS5103221.5623794IPR001471AP2/ERF domain
PfamPF008478.9E-113786IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-293794IPR001471AP2/ERF domain
SMARTSM003803.1E-3237100IPR001471AP2/ERF domain
PRINTSPR003671.4E-83849IPR001471AP2/ERF domain
PRINTSPR003671.4E-86076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MMNFSSYFSS SSSSDKKSSS SRRGHQQQQP DAANTTRYLG VRRRPWGRYA AEIRDPATKE  60
RHWLGTFDTA EEAAVAYDRA ARSLRGARAR TNFAYPDLPP GSSVTPYLSP DLTSGDNSAQ  120
LLQPFYAADP AAALANPAAN GAAVKDDYDY GYSDADINSL MDDIAIPDDL SAMGGDCGGA  180
MMDMSSMYGT GAANAGAGGG WCDASEFGGY GAGASTTAPG AHGMYFEEGH VHSPLFSPMP  240
AVDDACADGF QLGGSSSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-183893662ATERF1
3gcc_A4e-183893662ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00241.1.g00320.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741061e-129EU974106.1 Zea mays clone 439808 AP2 domain containing protein mRNA, complete cds.
GenBankKJ7276701e-129KJ727670.1 Zea mays clone pUT5597 AP2-EREBP transcription factor (EREB91) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152173.11e-105AP2 domain containing protein
TrEMBLA0A3L6Q9Q71e-103A0A3L6Q9Q7_PANMI; Ethylene-responsive transcription factor LEP-like
TrEMBLB6UA411e-103B6UA41_MAIZE; AP2 domain containing protein
STRINGPavir.Gb01913.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-24ERF family protein