PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00253.1.g00150.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 1090aa MW: 115755 Da PI: 8.1901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00253.1.g00150.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	493	514	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r H Zpz_sc00253.1.g00150.1.am.mk 493 TCKLCSRRFASPRALAGHMRAH 514 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.89E-5	153	180	No hit	No description
SMART	SM00355	4.1	156	178	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.993	156	183	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	158	178	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.074	158	178	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.66	492	515	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	492	514	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	7.7E-4	493	514	No hit	No description
SuperFamily	SSF57667	1.31E-5	493	514	No hit	No description
PROSITE pattern	PS00028	0	494	514	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.31E-5	653	677	No hit	No description
Pfam	PF13912	2.6E-9	657	682	IPR007087	Zinc finger, C2H2
SMART	SM00355	75	658	678	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.642	658	687	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.6E-4	729	743	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1090 aa Download sequence Send to blast
MRSWCRCDIA VRSLSRINKG GRHGTAQHIP HAAAPQLPCP HHTWEGTAHT VKAARAPELE 60 RSDSDEPCVG HLLIVSHEHA GSPPCPLIFL SAIPEEKIRI HAAAACLRPA RGIHAAAEED 120 VDLVNVKAHG PQHPRSLMCE SSSRQMPPPP SPEYKHFCRA CNKGFTCGSA LGGHMRAHGA 180 SDDVFAGVDD DSLGDDESAR GRGTDDQWDA PGTSTSATHA CYSDDNEDRA EANGSARRSL 240 SPASDAANGE DDPAVAAGIW LKGKRSRRVK SMIAVDDASA APSSRRRTSG EEEDLANCLV 300 MLSSSHTDHA ATSSCTKVFT SHKLSAGTGP AIRRLESNVI NETPSHAETA DRNNRNGKVT 360 AVECSTHAGA DAKPSLYAST DGDTNVGTTG ETAEALSMAL ESVAAFNVAA APSGKKNTKT 420 HRVLRLPPPV HLRAISGSVL SKATTDFRER EITGKFGLSV VCSKAHTLGG GESSPGLSSL 480 VKFLQALAMA KNTCKLCSRR FASPRALAGH MRAHSVAAAK SQISSASSAS TSVVAGGDDD 540 GDAKKPVQGY VLREKPKRRV RLAEPDFSDR ESETTGFFPS SPSPTNGHAG SGGDAEPASS 600 VSDAATPEED VALSLMMLSR DSWPSPPPSL PSYHRDDSDA ECGARPAIAV AAQKRTRYEC 660 SACKKAFRSY QALGGHRASN VRGGKGGCCA PPLHTPPPSP PQPLPAVRDG AEGGSLEAAA 720 APVPPLLPRF SSGQALGGHR RSHLCSAPVA AEDSPISNPP VAMKSHGFID LNLPPTLDDV 780 EVSAVSDARI PSSRRSQLAG SGSGTVYPAQ LVLLRSFLSS RDAAPRARHE RRKECGLQIE 840 RIAKISFESY SALAGGFVRT RVLYEDAVGY DGIYSYLDFC QGEELVVGYL HVWRRVVGYT 900 HGPRPQYTWH RFCRNLPLCS ALGLRCGVDR VSGQQWWSPA SGGALVAPAA RARAALVCSS 960 AWQRYAVFPL VVVPETFADF VEAMVVALKD WKMSLKSHRF FVGTLYRTDD DNTADGSSVC 1020 RSLITRRRLA AACARGPYTE WTARRGEQLC PAVQGTRVPE PSLCSVLTSG RAALDCETSR 1080 TLDPSPVGSR

Sequence ? help Back to Top

Protein Sequence Length: 1090 aa Download sequence Send to blast

MRSWCRCDIA VRSLSRINKG GRHGTAQHIP HAAAPQLPCP HHTWEGTAHT VKAARAPELE  60
RSDSDEPCVG HLLIVSHEHA GSPPCPLIFL SAIPEEKIRI HAAAACLRPA RGIHAAAEED  120
VDLVNVKAHG PQHPRSLMCE SSSRQMPPPP SPEYKHFCRA CNKGFTCGSA LGGHMRAHGA  180
SDDVFAGVDD DSLGDDESAR GRGTDDQWDA PGTSTSATHA CYSDDNEDRA EANGSARRSL  240
SPASDAANGE DDPAVAAGIW LKGKRSRRVK SMIAVDDASA APSSRRRTSG EEEDLANCLV  300
MLSSSHTDHA ATSSCTKVFT SHKLSAGTGP AIRRLESNVI NETPSHAETA DRNNRNGKVT  360
AVECSTHAGA DAKPSLYAST DGDTNVGTTG ETAEALSMAL ESVAAFNVAA APSGKKNTKT  420
HRVLRLPPPV HLRAISGSVL SKATTDFRER EITGKFGLSV VCSKAHTLGG GESSPGLSSL  480
VKFLQALAMA KNTCKLCSRR FASPRALAGH MRAHSVAAAK SQISSASSAS TSVVAGGDDD  540
GDAKKPVQGY VLREKPKRRV RLAEPDFSDR ESETTGFFPS SPSPTNGHAG SGGDAEPASS  600
VSDAATPEED VALSLMMLSR DSWPSPPPSL PSYHRDDSDA ECGARPAIAV AAQKRTRYEC  660
SACKKAFRSY QALGGHRASN VRGGKGGCCA PPLHTPPPSP PQPLPAVRDG AEGGSLEAAA  720
APVPPLLPRF SSGQALGGHR RSHLCSAPVA AEDSPISNPP VAMKSHGFID LNLPPTLDDV  780
EVSAVSDARI PSSRRSQLAG SGSGTVYPAQ LVLLRSFLSS RDAAPRARHE RRKECGLQIE  840
RIAKISFESY SALAGGFVRT RVLYEDAVGY DGIYSYLDFC QGEELVVGYL HVWRRVVGYT  900
HGPRPQYTWH RFCRNLPLCS ALGLRCGVDR VSGQQWWSPA SGGALVAPAA RARAALVCSS  960
AWQRYAVFPL VVVPETFADF VEAMVVALKD WKMSLKSHRF FVGTLYRTDD DNTADGSSVC  1020
RSLITRRRLA AACARGPYTE WTARRGEQLC PAVQGTRVPE PSLCSVLTSG RAALDCETSR  1080
TLDPSPVGSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	554	560	KPKRRVR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00253.1.g00150.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	6e-17	C2H2-like zinc finger protein