PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00254.1.g00320.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 587aa MW: 61047 Da PI: 9.3889

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00254.1.g00320.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.4	2.9e-39	261	385	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eae 76 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ Zpz_sc00254.1.g00320.1.am.mk 261 TVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStlnlpmR-- 339 5789************************************************************999998885433221.. PP TCP 77 sssssasnsssg....................................k 89 a+++s++ + Zpz_sc00254.1.g00320.1.am.mk 340 ---AGAGANSARaapfqalalhphqqhdmsammgyhhllppqqqepspQ 385 ...2222222221222223333333333332333322222222222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.8E-36	267	400	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.333	267	321	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MLPGLTPRTC GVPRPHQFPT HPRKATAARA LLPSLAAHAR SLARFLHPSP LSFLHATPPG 60 PATHPCPCLR PLLSPPRPRL AALRSLSLLP AAPPRPPRRL PPPSCVPGTC SYHRLPPHRV 120 TPPPEAKGAA FPFRSVSSVK GKALWPSLAA TRPSRGRTMD HGGGGGAPSS SNSAGASAGG 180 GGTSGSRGGE PQQHPHHAFY YTGPAAPAGS NSGVPPPPPS QQQASPFAGA LAITPVPAGD 240 QAQPSADKKA VVAAAPAAAG TVAKRPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH 300 KSDGETIEWL LQQAEPAIVA ATGTGTIPAN FSTLNLPMRA GAGANSARAA PFQALALHPH 360 QQHDMSAMMG YHHLLPPQQQ EPSPQDSNPS ASYMRKRYRE DLFKEDDDDD RQDPSAPKAR 420 EQHHQQQAAS STPQAPSAAM WAMAPNTAAP GAGAFWMVPV SATSAAAARP AEPQPMWSFG 480 AGSGAVQAPL QFMSRATYPP GGTGGSGVSD TNLGVFGAAH PYNRGASADQ QQTQTEQQGG 540 GDRGAEDEEE GDDDSGEEDN GNNNGNGSGS QQASLQETKP LPMEEDH

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MLPGLTPRTC GVPRPHQFPT HPRKATAARA LLPSLAAHAR SLARFLHPSP LSFLHATPPG  60
PATHPCPCLR PLLSPPRPRL AALRSLSLLP AAPPRPPRRL PPPSCVPGTC SYHRLPPHRV  120
TPPPEAKGAA FPFRSVSSVK GKALWPSLAA TRPSRGRTMD HGGGGGAPSS SNSAGASAGG  180
GGTSGSRGGE PQQHPHHAFY YTGPAAPAGS NSGVPPPPPS QQQASPFAGA LAITPVPAGD  240
QAQPSADKKA VVAAAPAAAG TVAKRPSKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH  300
KSDGETIEWL LQQAEPAIVA ATGTGTIPAN FSTLNLPMRA GAGANSARAA PFQALALHPH  360
QQHDMSAMMG YHHLLPPQQQ EPSPQDSNPS ASYMRKRYRE DLFKEDDDDD RQDPSAPKAR  420
EQHHQQQAAS STPQAPSAAM WAMAPNTAAP GAGAFWMVPV SATSAAAARP AEPQPMWSFG  480
AGSGAVQAPL QFMSRATYPP GGTGGSGVSD TNLGVFGAAH PYNRGASADQ QQTQTEQQGG  540
GDRGAEDEEE GDDDSGEEDN GNNNGNGSGS QQASLQETKP LPMEEDH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00254.1.g00320.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083691	1e-104	BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds.
GenBank	KJ726951	1e-104	KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808168.1	1e-118	transcription factor PCF3-like
TrEMBL	A0A3L6T4N8	1e-129	A0A3L6T4N8_PANMI; Transcription factor PCF3-like isoform X2
STRING	GRMZM2G089638_P01	1e-113	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-40	TCP family protein