PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00259.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 86aa MW: 9294.7 Da PI: 8.247

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00259.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.6	5.1e-26	5	54	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl ++s Zpz_sc00259.1.g00010.1.am.mk 5 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLSHFAS 54 89********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.7E-28	1	55	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.539	1	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.54E-24	2	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-24	5	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-15	18	33	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-15	33	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MAIRRIDNLA ARQVTFSKRR RGLFKKAEEL SILCDAEVGL VVFSATGKLS HFASSSSLSV 60 DGGDHQLSAD RSCVILDFMV VGVPPD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00259.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036048	1e-64	BT036048.1 Zea mays full-length cDNA clone ZM_BFb0093D17 mRNA, complete cds.
GenBank	BT038209	1e-64	BT038209.1 Zea mays full-length cDNA clone ZM_BFb0217J06 mRNA, complete cds.
GenBank	BT061608	1e-64	BT061608.1 Zea mays full-length cDNA clone ZM_BFb0164I07 mRNA, complete cds.
GenBank	BT087324	1e-64	BT087324.1 Zea mays full-length cDNA clone ZM_BFb0039N23 mRNA, complete cds.
GenBank	BT087852	1e-64	BT087852.1 Zea mays full-length cDNA clone ZM_BFb0227O08 mRNA, complete cds.
GenBank	EU956148	1e-64	EU956148.1 Zea mays clone 1558111 MADS-box transcription factor 47 mRNA, complete cds.
GenBank	EU962709	1e-64	EU962709.1 Zea mays clone 244916 MADS-box transcription factor 47 mRNA, complete cds.
GenBank	KJ726926	1e-64	KJ726926.1 Zea mays clone pUT3471 MADS transcription factor (MADS68) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001306702.1	3e-29	MADS-box transcription factor 47
Refseq	XP_008651762.1	3e-29	MADS-box transcription factor 47 isoform X1
Refseq	XP_008651766.1	3e-29	MADS-box transcription factor 47 isoform X1
Refseq	XP_025793840.1	3e-29	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793841.1	3e-29	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793842.1	3e-29	MADS-box transcription factor 47-like isoform X1
Swissprot	Q5K4R0	9e-29	MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBL	A0A1D6JR05	3e-28	A0A1D6JR05_MAIZE; MADS-transcription factor 68
TrEMBL	A0A317YAP9	1e-28	A0A317YAP9_MAIZE; Uncharacterized protein
TrEMBL	C0HH02	3e-28	C0HH02_MAIZE; Uncharacterized protein
STRING	Pavir.Ia04527.1.p	1e-28	(Panicum virgatum)
STRING	GRMZM2G059102_P03	1e-28	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-23	MIKC_MADS family protein

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489]