PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00259.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 758aa    MW: 83242.9 Da    PI: 10.6994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00259.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.9e-14536587155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ f+ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Zpz_sc00259.1.g00230.1.am.mk 536 QRMTHIAVERNRRRQMNEYFAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 587
                                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-13534591No hitNo description
SuperFamilySSF474593.27E-17535599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.158535586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14535591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11536587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11541592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MCLSVPRRTA AADSIQNMPS RDVFAPRIMT LLPPLRGQTR VCTRVVRSGP PVHHGEQERR  60
RLHLHGRDLQ LIKCATRRNA MLVRSKDEEA YDCARWPRPR DLTSAVPGRG NRISAADRAA  120
QSDRRKRLAS RPPPPQRAAD TTGLLRATGR AKEGDLLARV CMQAGLQIIT GISCRHSRTR  180
PLGTDQRTRH AAERHGGADV SIRAKLFKLD ACGYQANQAV TPGINSIAVE LLVLYWCGTS  240
IEQGAAKSGT THRGIGRIQS YSGVCHCAVA MHTELEQDEQ EDMIGCWRRR APGHCHWRPS  300
HAAQNRSICA PVLTIPLQQL LNHRPYIHFA IKPSTLSVLR KAPAYAACRP AHLGGVSWPG  360
NEQRRETIRP RAESLVNHCL VRPPKHKTPP VARGPGCRVR VRLAHLTRPP SYKTRHRRAA  420
SPRRTHIHTP AVVFSQQAGG HFGYGRVDSP YALPWWDLPG SAGFGFAGAG WDPDGLHASV  480
AAPDVVDEWE TASAKQDQSS EASTEGKRAA VPAAAPERRK RRRTKVVKNK EEIETQRMTH  540
IAVERNRRRQ MNEYFAVLRS LMPPSYAHRG DQASIVGGAI NYVRELEQLL QSLEVQRSIK  600
NRVGCSCTDA AGKSPFAGFF TFPQYSTSST HAGCGTATTA SSSNSTSSVV TGDAAGSATT  660
ARPAAVADIE VTMVEGHASL KVLARRRPKQ LLRLVAALQQ LRVPPLHLNV TSLDGMVLYT  720
FSLKVEDDSR MGPVEDIATA VHEILSSTQK LEEETAVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1518522RKRRR
2518523RKRRRT
3536547RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00259.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9613971e-90EU961397.1 Zea mays clone 235094 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-47bHLH family protein