PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00261.1.g00430.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 147aa MW: 17349.9 Da PI: 9.7194

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00261.1.g00430.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.1	1.9e-45	16	132	1	117
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 + pGfrFhPtdeel+ +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g Zpz_sc00261.1.g00430.1.sm.mk 16 MLPGFRFHPTDEELIGFYLKRKIQHKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAG 95 579*************************.89***********9888999********************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkge 117 +Wkatg+d++++s+ +++ +glkk+Lvfykgra kg Zpz_sc00261.1.g00430.1.sm.mk 96 FWKATGTDRPIYSSdGSKCIGLKKSLVFYKGRAAKGY 132 *********966677************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-48	12	132	IPR003441	NAC domain
PROSITE profile	PS51005	45.541	16	147	IPR003441	NAC domain
Pfam	PF02365	8.7E-21	18	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MDEIRSDDME KQEEVMLPGF RFHPTDEELI GFYLKRKIQH KSLPIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLKKS 120 LVFYKGRAAK GYTKKSALLR EHIVYND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-44	4	131	3	128	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00261.1.g00430.1.sm.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC196472	1e-74	AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679437.1	1e-90	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	2e-78	FEZ_ARATH; Protein FEZ
TrEMBL	K3YYF7	2e-89	K3YYF7_SETIT; Uncharacterized protein
STRING	Pavir.Ab02998.1.p	4e-90	(Panicum virgatum)
STRING	Si019308m	4e-90	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13717	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-80	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]