PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00267.1.g00260.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 196aa    MW: 21711.6 Da    PI: 9.441
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00267.1.g00260.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.6e-081421752154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp+ e++++L +++gL+ +q+ +WF N+R +
  Zpz_sc00267.1.g00260.1.sm.mkhc 142 KWPYPTDEDKTRLVQETGLQLKQINNWFINQRKR 175
                                     569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-193478IPR005540KNOX1
PfamPF037908.3E-173774IPR005540KNOX1
PROSITE profilePS5007111.645116179IPR001356Homeobox domain
SuperFamilySSF466897.27E-16118184IPR009057Homeodomain-like
SMARTSM003894.8E-10118183IPR001356Homeobox domain
CDDcd000861.45E-11119180No hitNo description
Gene3DG3DSA:1.10.10.601.6E-24123182IPR009057Homeodomain-like
PfamPF059201.9E-18136175IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMAFQYADHE LGMDTAAAAA NPGFGAGVVG SGWEREKAAI AAHPLYERLL EAHVACLRVA  60
TPVEQLPRID AQIAARPPPM AAAAAAAAVG GAQSGDEELD LFMGYREKLV DIREEIMRKR  120
RAGKLPGDTA STLKAWWQAH SKWPYPTDED KTRLVQETGL QLKQINNWFI NQRKRNWHNN  180
LASSSSDKSK RKSFWA
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00267.1.g00260.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1823861e-44AM182386.2 Zea mays partial mRNA for KNOX family class 2 homeodomain protein (knox7 gene), variant 2.
GenBankAP0040871e-44AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBankAP0149581e-44AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankEU9685241e-44EU968524.1 Zea mays clone 321842 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ0J6N44e-51KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA3A3U67e-69A3A3U6_ORYSJ; Uncharacterized protein
STRINGOGLUM06G23980.13e-54(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4606933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.25e-47KNOTTED1-like homeobox gene 3