PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00271.1.g00030.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 130aa    MW: 15083.4 Da    PI: 9.9253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00271.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.21.1e-21201251121
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lp Gf FhP+dee++++yL +k+ +++ ++  +i+e+        ++      + kewyf++++ +ky++g r nrat++g
  Zpz_sc00271.1.g00030.1.sm.mk  20 LPLGFGFHPSDEEIITFYLMPKMLDSNSTA-VAIAEA--------KM------GGKEWYFYCQKVHKYQKGVRINRATSAG 85 
                                   699*********************999776.345553........33......679************************* PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykg.rapkgektdW 121
                                   +Wkatgkdke+++ k+ +  l+  Lv +k   +++  k +W
  Zpz_sc00271.1.g00030.1.sm.mk  86 FWKATGKDKEIYQ-KTGHRCLRMALVTHKHkFSNRCPKKHW 125
                                   *************.666789999999996524455566677 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-2718115IPR003441NAC domain
PROSITE profilePS5100516.520130IPR003441NAC domain
PfamPF023656.5E-1421112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEDHKYEGIR GTIDDAGRNL PLGFGFHPSD EEIITFYLMP KMLDSNSTAV AIAEAKMGGK  60
EWYFYCQKVH KYQKGVRINR ATSAGFWKAT GKDKEIYQKT GHRCLRMALV THKHKFSNRC  120
PKKHWLDRCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-1781262134Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00271.1.g00030.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239122.17e-31PREDICTED: NAC domain-containing protein 100-like
RefseqXP_023522820.14e-31NAC domain-containing protein 92-like, partial
SwissprotQ9LJW33e-29NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A166A9R02e-29A0A166A9R0_DAUCS; Uncharacterized protein
STRINGAES752215e-29(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4777123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-31NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]