PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00274.1.g00310.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 977aa    MW: 103782 Da    PI: 9.7662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00274.1.g00310.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16517563455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Zpz_sc00274.1.g00310.1.am.mk 517 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 563
                                   5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.54E-17510567No hitNo description
Gene3DG3DSA:4.10.280.103.1E-20510572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006513562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-20516590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-13517563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-17519568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MATTNAGQDR TGSRRTSELA RAPTGQDAPP VGARWPGERP RAREGAGNLR SASRHGGGGW  60
TYGTGANQKP GADATADEQL DFAGRPVGAG RPLSPRAGIH ARRCRRRDTP TNEFLATPTD  120
GSSPLVRRFL GLGWWRVALN NSPRPLPLLV SILNLHTRNA TVPAPAPTAV LPRRAAPATL  180
APVRRLAARS FICRNRPGDE LAELLWDSNC PALRTTPHFP AAAPFQPFTC GAAGSSRANE  240
LLNKRHAVGA MDDDVAGLGG IPAVHHDHDH DAVPWLHCPV IDDGDSDTAP LPPEYCAGLL  300
SPGYPGLHAL PDPTPTVSDI ARSSSTGGAV VVPATRAVTP EAATAQPQPS AAGEGVMNFT  360
FFSRPLQRLQ PSAAAAAPPP SNLLEFTTAA QTAASRLRNT PLFSEQRMAW LQPPKGPPRA  420
TAGAPPATDR HHHAEAAATV TQNRMQQPPD ARPPDATAGV TTSSVCSGNG DRSHDKRSSH  480
HPTAECSVSP DEDMDDEPGA VRRPTERGTK RSRTAEVHNL SERRRRDRIN EKMRALQELI  540
PNCNKIDKAS MLEEAIEYLK TLQLQVQLMS MGTGLCVPAA PMLMQMQMQM PLVAPPFPHL  600
GMGLGFGAVG FDMLPRFAAA QFPCPVMPPG AVFGMPGQVV PSPLAPFAHV NGAATVEHRE  660
AAAAAAPAPP GGGAAAGDRQ PSVPVPLQVR EAGVDLGSES LAAVLLFIHS YKVSRRGSGS  720
KPCVCSYQPI SSRVRSVDAR GVAKKTSMDT RRFPFLRVTV HACADDEQAS KAELILILQP  780
CAVKDVGVSA DSWIGHSSQP SSMSLAATVV QSLLCTTPHR RWSVAGRGTG RRATLRGGKE  840
SGIGPTVSVG LLRHPMLKMS GPQRDSAHET PSRTGVMFTL GLFLSGIDHD GISSLYSYLT  900
VAVSESFSQS SSHVCLKHNI TTWEQYNKIK VASSSSSEAN DEWPSRKGAR LSRRGSFRAK  960
GKGRQQWPAP EVDPEPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1521526ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00274.1.g00310.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-34phytochrome interacting factor 3