PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00275.1.g00450.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 234aa MW: 25146.9 Da PI: 8.2825

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00275.1.g00450.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.5e-41	61	137	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dl+ akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ Zpz_sc00275.1.g00450.1.sm.mkhc 61 CQVEGCGLDLTGAKEYHRKHRVCEAHTKCPRVVVAGHERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 137 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.8E-33	54	122	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.24	58	135	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.51E-39	59	140	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.6E-31	61	134	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEWTVPKPAA SPSSPPLLWD WGDSAMPASG SSGEAPARRG GREREGKRAK GEDGGAGEVK 60 CQVEGCGLDL TGAKEYHRKH RVCEAHTKCP RVVVAGHERR FCQQCSRFHA LSEFDQKKRS 120 CRRRLSDHNA RRRKPQPDAF AFASARLPSS LFGPDTSITA SKFDGAPDLQ HALSLLSAGS 180 CGFPDPVQQA SCLIQFSGTS ENSGDLHSSH GGSSALVSCA DEQHTAPQSQ LSYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-27	51	134	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	133	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00275.1.g00450.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU965000	1e-111	EU965000.1 Zea mays clone 283067 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951747.1	1e-92	squamosa promoter-binding-like protein 4
Swissprot	Q6H509	1e-63	SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBL	A0A3L6QEF9	2e-91	A0A3L6QEF9_PANMI; Squamosa promoter-binding-like protein 4
STRING	Pavir.J20730.1.p	7e-94	(Panicum virgatum)
STRING	Si017749m	5e-92	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6271	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-41	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]