PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00279.1.g00290.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 397aa    MW: 42520.3 Da    PI: 7.8392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00279.1.g00290.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09183230455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Zpz_sc00279.1.g00290.1.sm.mk 183 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 230
                                   8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-15177237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-10177234No hitNo description
PROSITE profilePS5088815.491179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14179234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAQCGGDLLS RILHQETVKG LLGLDDDKFG AMCSAFGYLQ EWPELSAMCG NDMAPPDAAN  60
GNDDDSCSAG GGLRKRKPDA CHDAKVRDLC LRKARASLFH KMCLLTSDSG GIVTWQGEHG  120
DGCKKPRGKQ QLSLSDRGEV AGKGKQERPK AGSKKKADAA SPAAGQKTDY IHVRARRGQA  180
TDSHSLAERV RRERISERMR YLQELVPGCS KVTGKAGMLD EIINYVQSLQ NQVELPVTSA  240
SSGQRVVAVR AHWTLLLQFL SMKIAASNPV VSFDIVEDLF GRQLKQACNT AASSAMAVPA  300
GQPQPSCVQM SPMQQMHLPA GSSGFGLEMV VNSSYPPAPS GPMPAATSGS NAPCLNMNGP  360
AAAAVWDIGS QNFFSGFDAQ FQPIESDYLL DNLKMEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00279.1.g00290.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369781e-101BT036978.1 Zea mays full-length cDNA clone ZM_BFb0150D13 mRNA, complete cds.
GenBankBT0667151e-101BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds.
GenBankBT0834861e-101BT083486.1 Zea mays full-length cDNA clone ZM_BFb0002M11 mRNA, complete cds.
GenBankKJ7268611e-101KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.11e-144transcription factor bHLH49-like
TrEMBLA0A0A9CZD01e-156A0A0A9CZD0_ARUDO; Uncharacterized protein
STRINGSi017630m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-35cryptochrome-interacting basic-helix-loop-helix 1