PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00284.1.g00200.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 258aa MW: 27812.6 Da PI: 6.5749

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00284.1.g00200.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	38.4	4.2e-12	145	167	36	58
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 pylheSRh hAlrR+RgsgGrF Zpz_sc00284.1.g00200.1.am.mkhc 145 PPYLHESRHLHALRRARGSGGRF 167 69********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.8E-6	102	170	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-10	126	167	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	15.416	146	170	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MMSFSRHNEG FGHFATAANS TGAPLSWWPG GPHQLLYGEP LGQGKPPAVL EPEEPCRESR 60 FQVVPVSQAP KAAQREREFA DVSRFSSAQG EDKGSDHSAT VAFQSPSALY SGRFELGLGH 120 SVISSKNPYA EQHYGLIAPY GAGEPPYLHE SRHLHALRRA RGSGGRFLNT KKEANGKDAG 180 AGGKTTLSNP LMLQTASPGS EIQQSELGSL SSVSSFSGSE VSSMYDHEDV DHYHSFDQLR 240 TPFFTPLPSL MDGEHGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00284.1.g00200.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963196.1	3e-95	nuclear transcription factor Y subunit A-10
Refseq	XP_022680516.1	3e-95	nuclear transcription factor Y subunit A-10
Swissprot	Q9M9X4	8e-14	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A0A9CZS6	1e-102	A0A0A9CZS6_ARUDO; Uncharacterized protein
STRING	Si022607m	1e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-12	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]