PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00284.1.g00300.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 139aa    MW: 15634.5 Da    PI: 10.0315
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00284.1.g00300.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1341.9e-413110794170
                           YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                     ++ +   + + e+ ++++   + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Zpz_sc00284.1.g00300.1.am.mkhc  31 SKFQLPLMYSAENGHLQQHALATRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 107
                                     4444444555666667777779*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-3928107IPR006780YABBY protein
SuperFamilySSF470958.51E-951101IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-555101IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MHATENIRPQ GIINGTSHDQ FGHLEFGSSS SKFQLPLMYS AENGHLQQHA LATRPPEKRQ  60
RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLSSP GREVGKKLVD  120
ETVAAVTTPD PTNKIQGFY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00284.1.g00300.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9608524e-57EU960852.1 Zea mays clone 229062 axial regulator YABBY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804908.15e-61protein YABBY 6-like isoform X2
SwissprotQ2QM172e-49YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1512e-68A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGPavir.Ca02862.1.p5e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.18e-36YABBY family protein