PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00289.1.g00380.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 220aa    MW: 22864.3 Da    PI: 4.3733
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00289.1.g00380.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY45.21.9e-1411492259
                                    EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                                     +YYrC+s+ gCp++k+vers+ dp+ v++tY+ eHnh+
  Zpz_sc00289.1.g00380.1.sm.mkhc 11 AAYYRCSSSkGCPARKQVERSRLDPDKVIVTYSFEHNHS 49
                                    58*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007749.1E-8150IPR003657WRKY domain
SuperFamilySSF1182905.23E-111149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-141249IPR003657WRKY domain
PROSITE profilePS5081117.0631251IPR003657WRKY domain
PfamPF031062.1E-121248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDSEWNDGAA AAYYRCSSSK GCPARKQVER SRLDPDKVIV TYSFEHNHSG AVPRVQNRQV  60
IPKPKAQTVP PEPAVESVSV GNMHDVAATA TAATCAGALA TRGNSGAGSV EVHDDFRWLY  120
DGVSVTSSTS PSDADAADDM LYGSMFFGAA VSAPAPLPDE FGDVGAWFGA GEAAEEDAMF  180
AGLGELPECA MVFRRHAGDG LAMAGAGMKV EQPGEGTAMT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00289.1.g00380.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097703e-39AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAP0031423e-39AP003142.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0435H01.
GenBankAP0149573e-39AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY8706033e-39AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankCP0126093e-39CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8312733e-39CT831273.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458443.12e-72probable WRKY transcription factor 65
TrEMBLA0A3L6SUP73e-75A0A3L6SUP7_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Ea02968.1.p3e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.16e-15WRKY DNA-binding protein 69