PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00292.1.g00390.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 473aa MW: 50989.1 Da PI: 6.4531

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00292.1.g00390.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	304.6	2.4e-93	99	468	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 +el+l+cA+ ++ gd a+++++ l la p+ d+ Rla +f++ALa+r+ +++ e++++ p + s +a+ Zpz_sc00292.1.g00390.1.am.mk 99 RELVLACADRLHRGDVDGARRVVEALLSLADPRSdDAADRLAYHFARALARRVDGKGREVAESPVPPAPS-------PSAY 172 5789***********************9998879***************999999887665555.......4788 PP GRAS 82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskee 157 +++++ P+l+f+hltaNqaIlea+++ +rvHi+D+d+ +G+QWp+Llqa+a+R+ gpp++RiTg g +++ Zpz_sc00292.1.g00390.1.am.mk 173 LAYNQMAPFLRFAHLTANQAILEAAATGvaRRVHIVDLDAAHGVQWPPLLQAIAERAdpdLGPPEVRITGAGT----DRDV 249 99******************999878***********************66666*******.... PP GRAS 158 leetgerLakfAeelgvpfefnvl...vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233 +++tg+rL+ fA++l++pf+f++l ++l++ L+++p+E+l+Vn+vl lh+l ++++++ +L+ vks Zpz_sc00292.1.g00390.1.am.mk 250 IHRTGDRLRAFASSLNLPFRFHPLllpCPTQLAAYraISTGLELHPDETLVVNCVLFLHQLG-GEGEVAD----FLRWVKS 325 ********************6552223333311245679999***********8.5555555....*** PP GRAS 234 lsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 ++P+vv+++e+ea+ ++ ++ +r++ a++yysa+fd+lea +p+ s +r +vE e+lg+ei ++ a ++ Zpz_sc00292.1.g00390.1.am.mk 326 MNPTVVTIAEREASIGGYcpnDLPRRVAAAMDYYSAVFDALEAMVPPGSADRLSVELEILGQEIDAAIDPCLAG--GMSRR 404 ********9997654559******************************************987776..56789 PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +e W ++ ++aG++p pls++a++qa+ llr ++ s+gy vee +g+ +lgW++rpL+svS+W+ Zpz_sc00292.1.g00390.1.am.mk 405 FEWWASAARAAGLSPRPLSTFAVSQARFLLRLHYpSEGYVVEEARGACFLGWQTRPLMSVSSWQ 468 9************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.819	72	447	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-91	99	468	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MNARHLRTVE DGGDPMHNGT GRMIANSALS GLCRPELRFA CARAPGCYTG LIILCHALLR 60 TLPPDAAMLG APGGGRDDHG EAQPHENRVG PAAAPSSPRE LVLACADRLH RGDVDGARRV 120 VEALLSLADP RSDDAADRLA YHFARALARR VDGKGREVAE SPVPPAPSPS AYLAYNQMAP 180 FLRFAHLTAN QAILEAAATG VARRVHIVDL DAAHGVQWPP LLQAIAERAD PDLGPPEVRI 240 TGAGTDRDVI HRTGDRLRAF ASSLNLPFRF HPLLLPCPTQ LAAYRAISTG LELHPDETLV 300 VNCVLFLHQL GGEGEVADFL RWVKSMNPTV VTIAEREASI GGYCPNDLPR RVAAAMDYYS 360 AVFDALEAMV PPGSADRLSV ELEILGQEID AAIDPCLAGG MSRRFEWWAS AARAAGLSPR 420 PLSTFAVSQA RFLLRLHYPS EGYVVEEARG ACFLGWQTRP LMSVSSWQSA VEQ

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MNARHLRTVE DGGDPMHNGT GRMIANSALS GLCRPELRFA CARAPGCYTG LIILCHALLR  60
TLPPDAAMLG APGGGRDDHG EAQPHENRVG PAAAPSSPRE LVLACADRLH RGDVDGARRV  120
VEALLSLADP RSDDAADRLA YHFARALARR VDGKGREVAE SPVPPAPSPS AYLAYNQMAP  180
FLRFAHLTAN QAILEAAATG VARRVHIVDL DAAHGVQWPP LLQAIAERAD PDLGPPEVRI  240
TGAGTDRDVI HRTGDRLRAF ASSLNLPFRF HPLLLPCPTQ LAAYRAISTG LELHPDETLV  300
VNCVLFLHQL GGEGEVADFL RWVKSMNPTV VTIAEREASI GGYCPNDLPR RVAAAMDYYS  360
AVFDALEAMV PPGSADRLSV ELEILGQEID AAIDPCLAGG MSRRFEWWAS AARAAGLSPR  420
PLSTFAVSQA RFLLRLHYPS EGYVVEEARG ACFLGWQTRP LMSVSSWQSA VEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-49	134	468	38	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00292.1.g00390.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB491742	0.0	AB491742.1 Zoysia japonica ZjLsL gene for lateral suppressor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806722.1	0.0	protein MONOCULM 1
Swissprot	Q84MM9	1e-141	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	W8VJT6	0.0	W8VJT6_9POAL; Lateral suppressor
STRING	Pavir.J22770.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-78	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]