PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00301.1.g00450.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 298aa    MW: 32224.2 Da    PI: 8.0159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00301.1.g00450.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12237282655
                                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +++Er RR ri +++ +L++l+P+     +k  + +e+L  AveYIk+Lq
  Zpz_sc00301.1.g00450.1.sm.mkhc 237 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDIAVEYIKELQ 282
                                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.392231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-15234293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-13235286No hitNo description
Gene3DG3DSA:4.10.280.105.3E-14236287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10237282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMWMCRFFSA ESLGLTSCES RARTVDGPRA LERAYGGSGE IRVPPPPVSV SAQRGQPQQQ  60
HGLLRHSSSP AGLLSRLMAD THGMGSYSHA GTDAMAHGHT RRLSSQWSFS RQDLPQISEM  120
GMIPDNIGES IVAGGAACNS SSDGSGAQSS SYLSRNFSVS SWDDANSIMF SSSPGKKVKL  180
VGAAADVITG FGSIDSQFGL SNSSLEMSGM DDYLQLQQDS VACRVRAKRG CATHPRSIAE  240
RERRTRISKR LKKLQDLVPN MDKQTNTSEM LDIAVEYIKE LQGQVEVCIS CCNALHIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00301.1.g00450.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.11e-146transcription factor bHLH128-like
TrEMBLA0A2S3HP781e-144A0A2S3HP78_9POAL; Uncharacterized protein
STRINGPavir.J01306.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-46bHLH family protein