PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00304.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 585aa MW: 64257.6 Da PI: 7.1522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00304.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.5e-13	274	321	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+L+ Zpz_sc00304.1.g00040.1.am.mk 274 KNHVMSERRRREKLNEMFLILKSLVPTiH------KVDKASILAETIAYLKQLE 321 5899*********************66......***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.2E-17	2	88	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.897	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.62E-15	274	325	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-17	275	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-11	275	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-17	275	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-16	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048629	Biological Process	trichome patterning
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MQRSEQLREL YETLLSGGRD HRAARPVAAL SPEDLGDTEW YYVVCMTYAF RPGQGLPGRS 60 FTCNEHVWLC NAHLADSKTF PRALLAKVRE DPDLVRLVTE SFWERQLPAC TEEPCSRPPA 120 NGTGDADITT VFEDLDHNAM ETMITSRGQE FGAVGILSSA SLEHAANEID ELYSLCDELG 180 VDDWIMEGPF EVPCSPKAVA PGPGDTDDAG NVAMPVDRMT SFMAWRGPDS SGAAVPVIGE 240 PQKLLKKVVA GGAWENSSGA GGNSTRSTQE CGIKNHVMSE RRRREKLNEM FLILKSLVPT 300 IHKVDKASIL AETIAYLKQL ERRVEELEST DKDEHMTQPS ETRPSGRHSN GGVEKRVSGS 360 KRKKAFKLSD DTEREHHWVR SKDGTSNVTV TVTDKDVLLE VHCQWEELLV TRVFDAMKTL 420 HLDVLSVQAS TQDGFMGLKI RAQRNGPAKP EGAKQRSPCG DSRDIFAARD DVSFFIQRKA 480 KRYLTAARLS STFLLPCFPV YPQFARTRLG SSSAPRRSTC GRRPCSLGLI ARPLRPVFDT 540 SAATGAAAAS AGSQPVSGFR SGRAGRHLVA RILDAPLAVE RSSES

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MQRSEQLREL YETLLSGGRD HRAARPVAAL SPEDLGDTEW YYVVCMTYAF RPGQGLPGRS  60
FTCNEHVWLC NAHLADSKTF PRALLAKVRE DPDLVRLVTE SFWERQLPAC TEEPCSRPPA  120
NGTGDADITT VFEDLDHNAM ETMITSRGQE FGAVGILSSA SLEHAANEID ELYSLCDELG  180
VDDWIMEGPF EVPCSPKAVA PGPGDTDDAG NVAMPVDRMT SFMAWRGPDS SGAAVPVIGE  240
PQKLLKKVVA GGAWENSSGA GGNSTRSTQE CGIKNHVMSE RRRREKLNEM FLILKSLVPT  300
IHKVDKASIL AETIAYLKQL ERRVEELEST DKDEHMTQPS ETRPSGRHSN GGVEKRVSGS  360
KRKKAFKLSD DTEREHHWVR SKDGTSNVTV TVTDKDVLLE VHCQWEELLV TRVFDAMKTL  420
HLDVLSVQAS TQDGFMGLKI RAQRNGPAKP EGAKQRSPCG DSRDIFAARD DVSFFIQRKA  480
KRYLTAARLS STFLLPCFPV YPQFARTRLG SSSAPRRSTC GRRPCSLGLI ARPLRPVFDT  540
SAATGAAAAS AGSQPVSGFR SGRAGRHLVA RILDAPLAVE RSSES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	ERRRRE
2	280	285	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00304.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY542311	1e-49	AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13027	1e-151	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A2T7CYI5	0.0	A0A2T7CYI5_9POAL; Uncharacterized protein
STRING	Si000845m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-40	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]