PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00304.1.g00480.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 274aa    MW: 29309.7 Da    PI: 6.0349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00304.1.g00480.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-1259961555
                           AP2 15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Zpz_sc00304.1.g00480.1.am.mk 59 WVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 96
                                  *******843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.89935104IPR001471AP2/ERF domain
SMARTSM003802.8E-1956110IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1458104IPR016177DNA-binding domain
CDDcd000181.53E-2358104No hitNo description
PfamPF008471.4E-65996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-2359104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSSFRDGWAS GDDGLLGKGL FKKTSVCFFF REFPLPRHVA SARHHKAQCT SICSLSSPWV  60
SEIREPRKKS RIWLGTFATA EMAARAHDVA ALAIKGRAAH LNFPGQAHLL PRPTSAAPKD  120
VQAAAALAAA AADFPSDANA KSPESSSSSS DDASVSFPPP RPPLQREDAL PDPDESLFDL  180
PDLLFDLRCG SSSCGASWAV DDDVAGGAAF RLEEPLIGFE RAGHPVSLSL SDSEQAPPPA  240
HHSTQQERSY NLPMPLDQTL SSAGDVRRGL VERE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00304.1.g00480.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084737e-87AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630007e-87AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149607e-87AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582827e-87AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824789.13e-60ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-31ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2S3I9358e-59A0A2S3I935_9POAL; Uncharacterized protein
STRINGOPUNC04G18530.18e-54(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.16e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]