PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00304.1.g00500.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 219aa    MW: 23594.3 Da    PI: 4.8047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00304.1.g00500.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-184089255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++ a+ +++g
  Zpz_sc00304.1.g00500.1.sm.mk 40 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDVAAVAIKG 89
                                  69****998.**********843...6*********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-114088IPR001471AP2/ERF domain
SMARTSM003802.9E-3640103IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-214098IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-314098IPR001471AP2/ERF domain
PROSITE profilePS5103222.4844097IPR001471AP2/ERF domain
PRINTSPR003675.4E-104152IPR001471AP2/ERF domain
CDDcd000181.16E-314199No hitNo description
PRINTSPR003675.4E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSHGTTCSSN SSSSGSLNAP SSPSSSCSKK RPRRDLKHPT YRGVRMRTWG KWVSEIREPR  60
KKSRIWLGTF DNPEMAARAH DVAAVAIKGR AAHLNFPELA HELPRAASAA PKDVQAAAAL  120
AAATVVDSPD PPPCHDADED EEELAAEQAT PDCGIASSNA PLSGGDVGLD CTFFDVPDAL  180
LDFGFMFSPP PMPSYCGSPW DDIPDDFCCF QEPLLLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1837971172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00304.1.g00500.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278641e-124KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164544.13e-80ethylene-responsive transcription factor ERF039-like
TrEMBLA0A1E5VNF52e-81A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038
STRINGTraes_2AL_0F08552FB.15e-81(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-29ERF family protein