PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00311.1.g00490.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 203aa    MW: 21036.3 Da    PI: 6.8113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00311.1.g00490.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-161967255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                   y+G+r  +++g+Wv+eIr+p     r  +r++lg+f tae+Aa a++ a+ +l+g
  Zpz_sc00311.1.g00490.1.sm.mk 19 FYRGIR--SRSGKWVSEIREP-----RkvRRIWLGTFPTAEMAAVAYDVAASALRG 67
                                  69***6..678*********8.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1921975IPR001471AP2/ERF domain
SMARTSM003802.6E-281981IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-181976IPR016177DNA-binding domain
PfamPF008472.3E-82067IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-272076IPR001471AP2/ERF domain
CDDcd000184.05E-262077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSAHGGGPSS PRSTGKHPFY RGIRSRSGKW VSEIREPRKV RRIWLGTFPT AEMAAVAYDV  60
AASALRGPDA ALNFPDLAAA RPAPASTSAD DIRAAAAEAA ASLEQPPRRV PAAGRGIAPA  120
AAATGPQQHG GSSAAAAAAQ PEGGSSAPNP YFLDEEALFE TPQFLRNMAA GMMMSPPRIS  180
PNSSDDSPDP SEAGESLWSY RDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1316751172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00311.1.g00490.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557511e-96EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318413.14e-95ethylene-responsive transcription factor ERF027
SwissprotQ9FJ906e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0A9B4N51e-99A0A0A9B4N5_ARUDO; Uncharacterized protein
STRINGPavir.Gb00885.1.p6e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-19ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]