PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00314.1.g00460.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 497aa    MW: 54302.4 Da    PI: 4.9733
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00314.1.g00460.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.9e-23112211399
                                   EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                            B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                   k lt+sd+++ g +++p+ +a+ +       ++++   +tl ++d+ g+ W++++iyr++++r++lt+GW++Fv+a+ L +
  Zpz_sc00314.1.g00460.1.sm.mk 112 KLLTQSDANNGGGFSVPRYCADLIfpklnfdDEPPV--QTLLVRDLAGNPWQFRHIYRGTPRRHLLTTGWSKFVNAKLLVA 190
                                   789****************99888*****8544444..49***************************************** PP

                                   T-EEEEEE-SSSEE..EEEEE-S CS
                            B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                   gD++vF+  +r ++el+v+++r+
  Zpz_sc00314.1.g00460.1.sm.mk 191 GDTIVFM--RRPDGELLVGMRRA 211
                                   *******..679********997 PP
2Auxin_resp584e-20239308168
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsd 68 
                                   aa+ a+++++F+v+Y+Pr ++ eFvv++++ve+al++ + +Gm+++m+ +e+ed++++ +  Gtv  +++
  Zpz_sc00314.1.g00460.1.sm.mk 239 AARLATEGKPFTVTYYPRLGAGEFVVPRQEVEDALTIDWEPGMQVRMQaMEGEDARRIIWaNGTVKELRA 308
                                   6788999****************************************659**********9****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-33101213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-27105213IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-19108210No hitNo description
PROSITE profilePS5086312.717110212IPR003340B3 DNA binding domain
SMARTSM010193.4E-15110212IPR003340B3 DNA binding domain
PfamPF023626.2E-20112211IPR003340B3 DNA binding domain
PfamPF065074.5E-16239311IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MALEPPAAAD DADPPVSTDV WLACAVPMSR LPAIGSEVYY FPHGHAEQCP EPLPSTLPRP  60
HIFPCTVTAL RLAADTKTDE VMAHVSLQPG PHGSYSAPAA AAADPAFRFY GKLLTQSDAN  120
NGGGFSVPRY CADLIFPKLN FDDEPPVQTL LVRDLAGNPW QFRHIYRGTP RRHLLTTGWS  180
KFVNAKLLVA GDTIVFMRRP DGELLVGMRR APRYPFVREG PGRDIDTRAR VPPERVIEAA  240
RLATEGKPFT VTYYPRLGAG EFVVPRQEVE DALTIDWEPG MQVRMQAMEG EDARRIIWAN  300
GTVKELRAQM WRPLEVEWDD SSPSMKRRHL NAWQLQFVGY APLFKRLRSH DTLLDSGVDS  360
TMVAPLLLTK ETGLLPTPPP PAAAAAAGMQ EARHNGPTDH PSSARITAQL LFPSPVEDLS  420
GASEILDPEL GSPPSNSATD MAPSTDLPAV ETRKSIQLFG VTITPHALPS AADASSEEVN  480
NEVADDRVVD ENAEQDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-551433649388Auxin response factor 5
4ldy_A1e-551933622353Auxin response factor 1
4ldy_B1e-551933622353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00314.1.g00460.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825005.10.0auxin response factor 13-like
SwissprotQ7XSS91e-143ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A2S3ICL10.0A0A2S3ICL1_9POAL; Auxin response factor
STRINGSi021833m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-90auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]