PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00316.1.g00440.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 168aa    MW: 18774 Da    PI: 6.5943
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00316.1.g00440.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-11545344
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                                  +W+t E e++ +a + +G++ W+++a+ +g g+t  +++ ++
  Zpz_sc00316.1.g00440.1.am.mk  5 SWSTSENERFERALATYGSD-WERVASAVGGGKTVDDVRRHY 45
                                  8*******************.********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129314.197153IPR017884SANT domain
SMARTSM007172.2E-7251IPR001005SANT/Myb domain
PfamPF002492.2E-9445IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-11553IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-5546IPR009057Homeodomain-like
CDDcd001675.44E-6545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MADMSWSTSE NERFERALAT YGSDWERVAS AVGGGKTVDD VRRHYALLVK DVGEIESGDY  60
GYPNSSAGNG NRNNRYAHVH APLYLAICSD DQAPEFHVLF VYACMFQVLA EAKPTGRKLD  120
GKPSEHVRRR STSCSSAESH VTWTMCEAKL SKHVCLVWEE HVPLHAWA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00316.1.g00440.1.am.mk
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2794934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-15RAD-like 1