PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00331.1.g00110.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 223aa MW: 23736.3 Da PI: 11.4058

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00331.1.g00110.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	52.2	1.2e-16	85	172	87	173
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetge 163 +sP+++++ +aN aI+eav+ ++++H +Dfd+s + Q +aL + La p+ sl++T++ +p+s ++ +l +++e Zpz_sc00331.1.g00110.1.am.mk 85 ASPCFRLALHAANVAIVEAVSDHRAIHLVDFDVSAP-QHAALVHYLAGVPG--TSLKVTAITDPTSPfaqsQTATLPAVEE 162 79*****************************987.99****9655..59****998889999999** PP GRAS 164 rLakfAeelg 173 rL+k+A+++g Zpz_sc00331.1.g00110.1.am.mk 163 RLKKLADRVG 172 ****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.781	1	223	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-14	85	172	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MPKLKVYLLA AAQLSHRRPA LSPPPRLSPM HSCASPRRQL LIPTPALQSS SLQRRRRPGP 60 IGAATHGAGL RVESSAGLAA LTAPASPCFR LALHAANVAI VEAVSDHRAI HLVDFDVSAP 120 QHAALVHYLA GVPGTSLKVT AITDPTSPFA QSQTATLPAV EERLKKLADR VGNAGLDDGG 180 SQGRGRRELL QHPCSAQSQK GTRRQRQVVD VPFFFFLIAG KID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00331.1.g00110.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B4FTE3	7e-35	B4FTE3_MAIZE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24922	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	3e-11	SCARECROW-like 1