PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00345.1.g00200.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 419aa    MW: 47997.2 Da    PI: 8.2354
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00345.1.g00200.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.3e-341041942101
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+++++ed++++ ++sws+ gnsfvv+d++ f++ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         we
  Zpz_sc00345.1.g00200.1.am.mkhc 104 FLSKTFDLVEDRSTDAVVSWSRAGNSFVVWDPHVFTEALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WE 173
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkk 101
                                     F+++ F +g+++ll++ikr+k
  Zpz_sc00345.1.g00200.1.am.mkhc 174 FANEGFLRGQRHLLKTIKRRK 194
                                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-58100193IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-34100193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-37100193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-31104193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-18104127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-18142154IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340143167IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-18155167IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
REATRPRRVS RTFHGIRDES RRARTARYLG ARLPPRTASS QPRFTDRFFT AAQMSRPVRV  60
LGRRAMDPVA PGIVKEELLE REDVGGRDAP RPMEGLHEVG PPPFLSKTFD LVEDRSTDAV  120
VSWSRAGNSF VVWDPHVFTE ALLPRLFKHS NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  180
RGQRHLLKTI KRRKPLATAP ASQQRTPVPA LCLEVGEFGF EKEIDKLKRD KNILITEVVE  240
LRQEQQTTRE HVHAMEKRLR TAEQKQVQMM GFLARAMRNP EFFQQLVQQQ DKRKELEDAC  300
SKKRRRPIDN APFYSPGETS QSEQIDSPFL FDSGVLDGLT EPGMPELENL AVNIQELGKG  360
SPDDGRMDQA SGQPELNDDF WEELLIDDYG DKAGQPELQA RTEVADEIAQ QLGYLRSKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-248519310129Heat shock factor protein 1
5d5v_B3e-248519310129Heat shock factor protein 1
5d5v_D3e-248519310129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192LKTIKRR
2291305KRKELEDACSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00345.1.g00200.1.am.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679240.10.0heat stress transcription factor A-2c isoform X2
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLK4ABP70.0K4ABP7_SETIT; Uncharacterized protein
STRINGSi036304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]