PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00348.1.g00170.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 514aa MW: 54673.2 Da PI: 8.171

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00348.1.g00170.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.8	2.3e-35	41	139	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC ++C++ap+f +eq kf+++h +FGas++ kll+++p+++r+da+ s++yeA+ar+ dPvyG+ + i Zpz_sc00348.1.g00170.1.am.mk 41 PCGACKFLRRKCINGCIFAPHFDSEQgVTKFEMLHTVFGASKIAKLLDEIPQHKRPDAVFSICYEAQARICDPVYGCSNQI 121 7*********************9977************************************************* PP DUF260 81 lklqqqleqlkaelallk 98 l+lq+q+ +l+ael ++ Zpz_sc00348.1.g00170.1.am.mk 122 LALQEQVWNLQAELTNMQ 139 ***********98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.413	40	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-35	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MGSMAHGVGT PSLSGGIGGG GGGGDGGSGN EGGEGGGRSG PCGACKFLRR KCINGCIFAP 60 HFDSEQGVTK FEMLHTVFGA SKIAKLLDEI PQHKRPDAVF SICYEAQARI CDPVYGCSNQ 120 ILALQEQVWN LQAELTNMQI RLAEMELARQ STFVGEPHVS IASTYPVYNL PASSNILATI 180 NPSSLSDLQT QSQLASQQQV QHQQLHQQQF VQESGSVVGN SNDLLALESE LMYGVTGVAP 240 PLQDIYHAYR RRPCLPATFC SPSLALPSPG CSLLPAPLTC CRSQPALTSH ANGGVWDQME 300 EGPARLMYCS ISFRNSSSTS DSRQQEGGGP EPRLVSSTLR PCLTHLPVRH PSCPSAAGPA 360 PFWIYLSAAL KLAVAGAVAA RCRPASHQPL QPATGPLALP NFAAAPDSLS TTTARCLPCS 420 PATACRRLRR PAAAHHRPFR TYLHCSPPPA PFPYHRSPSP CSAARKCPAC PSAAAACRRT 480 HHPDAARPHP SLLQFAEALP TPAICTMREW RENV

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MGSMAHGVGT PSLSGGIGGG GGGGDGGSGN EGGEGGGRSG PCGACKFLRR KCINGCIFAP  60
HFDSEQGVTK FEMLHTVFGA SKIAKLLDEI PQHKRPDAVF SICYEAQARI CDPVYGCSNQ  120
ILALQEQVWN LQAELTNMQI RLAEMELARQ STFVGEPHVS IASTYPVYNL PASSNILATI  180
NPSSLSDLQT QSQLASQQQV QHQQLHQQQF VQESGSVVGN SNDLLALESE LMYGVTGVAP  240
PLQDIYHAYR RRPCLPATFC SPSLALPSPG CSLLPAPLTC CRSQPALTSH ANGGVWDQME  300
EGPARLMYCS ISFRNSSSTS DSRQQEGGGP EPRLVSSTLR PCLTHLPVRH PSCPSAAGPA  360
PFWIYLSAAL KLAVAGAVAA RCRPASHQPL QPATGPLALP NFAAAPDSLS TTTARCLPCS  420
PATACRRLRR PAAAHHRPFR TYLHCSPPPA PFPYHRSPSP CSAARKCPAC PSAAAACRRT  480
HHPDAARPHP SLLQFAEALP TPAICTMREW RENV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-32	37	142	7	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-32	37	142	7	111	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00348.1.g00170.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP70272	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	8e-44	LBD family protein