PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00360.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 98aa    MW: 10616.9 Da    PI: 11.0924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00360.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP43.21e-1342704977
                                  EEETTT--SS--S-STTTT-------S-- CS
                           SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77
                                  fhelsefD+ krsCrrrL +hnerrrk +
  Zpz_sc00360.1.g00020.1.am.mk 42 FHELSEFDDIKRSCRRRLTGHNERRRKYA 70
                                  **************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.092169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-114073IPR004333Transcription factor, SBP-box
PfamPF031101.7E-84268IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSTGGGGPWD SLAFAVAAFA RTRMCASHAP DSGSKKRPFP LFHELSEFDD IKRSCRRRLT  60
GHNERRRKYA ADQHVGGGGG GSDHQGGRFP GNPPPLIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERRRKY
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00360.1.g00020.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560169.31e-15squamosa promoter-binding-like protein 13
SwissprotQ6Z4616e-14SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLI1GU513e-14I1GU51_BRADI; Uncharacterized protein
STRINGBRADI1G26720.15e-15(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3250634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.14e-13squamosa promoter binding protein-like 5