PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00363.1.g00270.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 251aa MW: 26272.5 Da PI: 4.0091

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00363.1.g00270.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.5e-07	39	70	13	44
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqV 44 + Le+ Fe+++ + e+++eLA+klgL+ rqV Zpz_sc00363.1.g00270.1.sm.mkhc 39 HLLEKSFEEENRLEPERKTELARKLGLQPRQV 70 67*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	9.51E-6	38	70	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-7	38	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.81E-5	38	71	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-4	39	70	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDSGRFIFNT TGSGAAQMLF LDCGMGGPAG GGLFHRGVHL LEKSFEEENR LEPERKTELA 60 RKLGLQPRQV VSLTEKLQEK EEGGVGAAAD TTEFTADVKQ ASLAVDPEET AAEVAFDAQQ 120 VKSEDRLSTG SGGSAVVDTD ALLGAGGALA AVDSSVESYF PAGDGHYTDC GMGPVDHHCA 180 AEFQSEEDDG AGSDEGCSYC PDDTAAAAAF FVGHAHHHVD DDEDDGELWM WNLACGHAFF 240 CSADGSSEVP C

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00363.1.g00270.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813024.1	5e-72	homeobox-leucine zipper protein HOX16-like isoform X1
Swissprot	Q6YWR4	1e-53	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A2S3GT38	1e-70	A0A2S3GT38_9POAL; Uncharacterized protein
STRING	Pavir.Ab02950.1.p	3e-71	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-18	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]