PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00365.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 1265aa    MW: 135151 Da    PI: 9.0704
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00365.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-08101310501954
                                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox   19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54  
                                    Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Zpz_sc00365.1.g00090.1.am.mk 1013 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 1050
                                    564459******************************88 PP
2BELL69.27.8e-238919451872
                          BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                    Vd+rY+ y+eq++ +++ Feavag  +a+ Yt+lA+++iSrhFr+L+d i+ q+
  Zpz_sc00365.1.g00090.1.am.mk 891 HVDRRYRSYCEQMRSLAGGFEAVAGERAAAAYTALASRTISRHFRNLRDGIVAQL 945
                                   79**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0011670799IPR006563POX domain
PfamPF075263.6E-14676764IPR006563POX domain
SMARTSM005741.4E-6821943IPR006563POX domain
PfamPF075261.4E-19889941IPR006563POX domain
PROSITE profilePS5007112.059911054IPR001356Homeobox domain
CDDcd000861.10E-119941055No hitNo description
SMARTSM003896.6E-99941058IPR001356Homeobox domain
SuperFamilySSF466895.56E-179951061IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-279971060IPR009057Homeodomain-like
PfamPF059201.9E-1710111050IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1265 aa     Download sequence    Send to blast
MEKKLPLALP LVHNERLWAR PWRWAKTAFF IAAMLASLLL VCAPPLLVVL LDLLLPPALL  60
HSFLRAQPQS QQLPASVSFA SSLLDQARAF RFGSSLVDLP AVSAARSLLI LCAYTACGGG  120
AAYMWVAVAC SVGSGCYVVA KAVGVFCGAG AGLQLQGKGQ VVAVEAMFLV SLALAAAHLA  180
MAYRASCRER RRLLVYRIDV EAWLVLDIPP VGSLSSARNV TKCRARARAA QQPPLVATSS  240
PSCGLAQASW MPVACDPSIP SRGARMLGRS AGCRAAHTHT HTHCACVAAP AGLHCLCVSG  300
RWMDGDALSV RSNKHARVRV FISPASTHAC TSSVPTTHCS TDAKAGRVVV VDSSSSEDLL  360
LLLYRSTTSL VVTDNKRAGK CKRTSEVCEL GRSRRSAHSG DDLRAGAAFN QIRADISAET  420
AASAPVKRAT PSRLPVAVSG PASIERRAVP HSTRGSTGAS GGVVVVVVVS DPSLLGAREP  480
LATRPPLPLR RRRRLCMRRC VMRDASVTSV RDEVAAAAAA GRGESLTRQP PPRSIHREQQ  540
LPSVPCFADY FSAATADATA GMPAMEEGAP ELFGYHADME LLGMRGLAAA MPGGDSKAAV  600
LIDAGSGGDH GQQQHHQLPT QAPLSLSLCR PDGGAVQGMT LHQHLAGSSR LQHQQQPAAW  660
STHDHSAGLV GASWHLCSSR FLLPTQQLLQ EFCSLPGAAD ITNKRAKAAA TTTKPSQEQQ  720
NEADGGVGSS ASASWAPSPQ IQAMDAVELQ RLKDKLYIML EEVSDDRSVM AARQGRLPVP  780
GPHPPLLETS IPLPLFRSSY PCHLFSTRGR PAIPVTPWPG QSLCSLHKNS AMTLRAQAAF  840
LFCSCMLLLH CLASDSLCRP IPCHSIQCRR LTQRKFYCAV PAQLHQAELM HVDRRYRSYC  900
EQMRSLAGGF EAVAGERAAA AYTALASRTI SRHFRNLRDG IVAQLQAVRK ALGEKGVAVP  960
GMTRGETPRL RVLDQCIRQQ KTLSQAGMME SHPWRPQRGL PERAVTILRA WLFEHFLHPY  1020
PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKGEQLH DGSGEGHVNP  1080
NPTSSQGAAS AEAYNGGRHG GVGEADAGGA GNNCVDRKPT RDQLMHDAGS LASVVNVGSS  1140
RGARLENFGL MDHHLHFDAP YDGGHHQAAS FGGVSLTLGL QQHADSRVDS GVNIAFGAPP  1200
PSAHHGGAAA GYLFATGHQQ QQQQTEVGHH VQFGGAGMDG DAVAHGQEHY RSLSAGFHLL  1260
RDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-1610001058563Homeobox protein Meis2
4xrm_B1e-1610001058563Homeobox protein Meis2
4xrs_A1e-1610001057158Homeobox protein Meis1
4xrs_B1e-1610001057158Homeobox protein Meis1
5bng_A9e-1710001058159Homeobox protein Meis2
5bng_B9e-1710001058159Homeobox protein Meis2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1488494LRRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00365.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579621e-174EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
GenBankEU9579801e-174EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-72TALE family protein