PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00369.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CAMTA
Protein Properties Length: 429aa    MW: 48685.5 Da    PI: 10.4246
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00369.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1153.74.1e-48321363106
                            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvev 80 
                                      e  +rw +++ei+a+L+n++k+++  ++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e 
  Zpz_sc00369.1.g00010.1.sm.mkhc  32 AEaASRWFRPNEIYAVLANYTKFQIIPQPIDKPASGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEK 110
                                     44499************************************************************************** PP

                            CG-1  81 lycyYahseenptfqrrcywlLeeel 106
                                     +++yYa++e++p+f rrcywlL++e+
  Zpz_sc00369.1.g00010.1.sm.mkhc 111 VHVYYARGEDDPNFFRRCYWLLDKEK 136
                                     ***********************993 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143763.44127154IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-5030139IPR005559CG-1 DNA-binding domain
PfamPF038594.8E-4034137IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.202.4E-4134221IPR020683Ankyrin repeat-containing domain
SuperFamilySSF525402.15E-7237338IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.85287309IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.766289317IPR000048IQ motif, EF-hand binding site
PfamPF006120.003290308IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0089310332IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.31311335IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-4312332IPR000048IQ motif, EF-hand binding site
SMARTSM000155.6391413IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.157393421IPR000048IQ motif, EF-hand binding site
PfamPF006120.03394413IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAGGAGGQDP LVASEIHGFL TCADLNYEKL MAEAASRWFR PNEIYAVLAN YTKFQIIPQP  60
IDKPASGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGED  120
DPNFFRRCYW LLDKEKMVAA LLSAGANPSL VTDPTPDAPG GYTAADLAAA RGYDGLAAYL  180
AEKGLTAHFE AMSLSKDTGR SPSRRNSIKQ HTKEFETLSE QELCLRESLA AYRNAADAAS  240
NIQAALRERT LKLQTKAIQL ANPENEAAAI VAAMRIQHAF RNYNRKKVMR AAARIQSHFR  300
TWKIRRDFMN IRRQAIKIQA AYRGHQVRRQ YRKVIWSVGV VEKAILRWRK KRKGLRGIAT  360
GMAVAMATDA EPASTAEEDY YQIGRQQAED RFNRSVVRVQ ALFRSYRAQQ EYRRMKVAHE  420
EAKVEFSGN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00369.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957727.11e-171calmodulin-binding transcription activator 6
SwissprotQ7XHR21e-163CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLC4JAR31e-175C4JAR3_MAIZE; Uncharacterized protein
STRINGSi028862m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.11e-81calmodulin binding;transcription regulators