PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00370.1.g00310.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 87aa    MW: 9743.99 Da    PI: 8.5287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00370.1.g00310.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-0814541554
                                    HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                             HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                                    +iN+ +++L++llP+   + ++   s    L++++ YIksL
  Zpz_sc00370.1.g00310.1.sm.mkhc 14 EINELISRLQTLLPSERgRRGGSQASTTKLLKETCSYIKSL 54
                                    7**************652444455999999**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.559154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-91377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-91371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-51454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSRRSRGGV SEEEINELIS RLQTLLPSER GRRGGSQAST TKLLKETCSY IKSLHREVDD  60
LSDRLSDLMA TMDHNSPGAE IIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00370.1.g00310.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581595e-93EU958159.1 Zea mays clone 1675661 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148242.13e-48uncharacterized protein LOC100281850
SwissprotA2X9L82e-42ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX02e-42ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A3L6DB697e-47A0A3L6DB69_MAIZE; Transcription factor ILI5
TrEMBLB6SZJ47e-47B6SZJ4_MAIZE; DNA binding protein
STRINGOPUNC02G30020.13e-45(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-24bHLH family protein