PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00371.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 411aa MW: 44881.4 Da PI: 10.6465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00371.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	40	88	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +e+ErrRR++++s ++L +l+Pk +s K ++ L +A YIk+L Zpz_sc00371.1.g00020.1.am.mk 40 KEIERRRRQHMKSLCSKLVSLIPKeH---YSSKntMTQLGSLDEAAAYIKKL 88 79********************55...45444799***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-10	26	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.664	34	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.66E-7	39	92	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-12	39	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-7	40	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-7	40	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MEKTAKKSGS GDTAAAAGKR SSTSNNNSGS SGTTAAVDRK EIERRRRQHM KSLCSKLVSL 60 IPKEHYSSKN TMTQLGSLDE AAAYIKKLKE RVDDLQQKRS SAQLLASMRG GGVGASTSVA 120 AVTAMSSDAG SSEEVAVAED ESVAPVVEVR QHDDGLGLDV VLISSVERPF KMHDVVTVLE 180 EEGTEIINAN FSVAGRKNFY TIHCRSLFLE AENARSTTLA WNVCLPLLET SSLLFLSIAD 240 NSSLLPPNLR QCFWPTRRWG RRSPAVLSRA LHRQGVRSRW ILALKKKVMR LRPTTLISTP 300 RSFVLHLPQP LAPDRVELAD VLTAGVDLLR LVVSVLQVRA RRATSGINTW NNWLHAASNE 360 RPLGSTICGL SHARLHVQGG AVGHALDSRL LYVTRTGSRH GWISLLCARL Q

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MEKTAKKSGS GDTAAAAGKR SSTSNNNSGS SGTTAAVDRK EIERRRRQHM KSLCSKLVSL  60
IPKEHYSSKN TMTQLGSLDE AAAYIKKLKE RVDDLQQKRS SAQLLASMRG GGVGASTSVA  120
AVTAMSSDAG SSEEVAVAED ESVAPVVEVR QHDDGLGLDV VLISSVERPF KMHDVVTVLE  180
EEGTEIINAN FSVAGRKNFY TIHCRSLFLE AENARSTTLA WNVCLPLLET SSLLFLSIAD  240
NSSLLPPNLR QCFWPTRRWG RRSPAVLSRA LHRQGVRSRW ILALKKKVMR LRPTTLISTP  300
RSFVLHLPQP LAPDRVELAD VLTAGVDLLR LVVSVLQVRA RRATSGINTW NNWLHAASNE  360
RPLGSTICGL SHARLHVQGG AVGHALDSRL LYVTRTGSRH GWISLLCARL Q

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00371.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-15	bHLH family protein