PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00385.1.g00190.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 355aa MW: 38635.1 Da PI: 7.112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00385.1.g00190.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25	3.4e-08	228	270	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r RR+ri ++ +eL +l+P ++ls ae+L +A +Y+k Lq Zpz_sc00385.1.g00190.1.am.mk 228 AARERRRRISQKTAELSRLIPGG-----QRLSTAEMLHEAARYVKLLQ 270 56899999***********96.....7**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.462	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-10	225	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.51E-8	226	273	No hit	No description
SMART	SM00353	1.4E-8	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-8	226	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	229	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MRFEPSRKAE EATRHWRFHE MRKSIQGAGR ERAAAASTLQ GAVTVNPWLR PPPITAPLSS 60 PVKRARSISA SNHPAMALSF HPTPAPGAAD MTSFLHDAHP DVSDDGLLGF VYDVPLNAVL 120 DDFLDLPSLN AAAFTTGPVS DDAAAFLGPL ENEFLTTECL EPAQHCDKNL RTACDYQQEP 180 AAMPEFAAEF VMAPLPPPLP LPQPRTFARG SADAKIEPRG NVGHQSVAAR ERRRRISQKT 240 AELSRLIPGG QRLSTAEMLH EAARYVKLLQ AQVGLLALMH TVDSSENEKT PAVMATREQM 300 HALLVSGSVQ ERLAAEGKCL VPRKLVDAVA KDKAVKSNPL LNRDLARFMA SLEQE

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MRFEPSRKAE EATRHWRFHE MRKSIQGAGR ERAAAASTLQ GAVTVNPWLR PPPITAPLSS  60
PVKRARSISA SNHPAMALSF HPTPAPGAAD MTSFLHDAHP DVSDDGLLGF VYDVPLNAVL  120
DDFLDLPSLN AAAFTTGPVS DDAAAFLGPL ENEFLTTECL EPAQHCDKNL RTACDYQQEP  180
AAMPEFAAEF VMAPLPPPLP LPQPRTFARG SADAKIEPRG NVGHQSVAAR ERRRRISQKT  240
AELSRLIPGG QRLSTAEMLH EAARYVKLLQ AQVGLLALMH TVDSSENEKT PAVMATREQM  300
HALLVSGSVQ ERLAAEGKCL VPRKLVDAVA KDKAVKSNPL LNRDLARFMA SLEQE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00385.1.g00190.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661333.1	5e-75	uncharacterized protein LOC101765829
TrEMBL	A0A3L6S6L1	3e-77	A0A3L6S6L1_PANMI; Uncharacterized protein
STRING	Pavir.Ia04589.1.p	2e-79	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-26	bHLH family protein