PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00387.1.g00160.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 532aa    MW: 56342.6 Da    PI: 7.1209
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00387.1.g00160.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS195.72.8e-601545272374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal...ppsetsekn..sse 76 
                                   ++lL  cA av++g+l+++q+l   l elas +gd+++Rlaa+ ++AL +rl    +   ++++   p+   ++     ++
  Zpz_sc00387.1.g00160.1.sm.mk 154 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRALLRRLPAaVGVAAAATVrvpPCVCPTPAFvaAEQ 234
                                   689*************************************************98333333333311133333333333333 PP

                          GRAS  77 elaalkl....fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvg 148
                                   +l  +++    f+evsP++ + + +aN aI +a+++    + +H++D+++s+G+QWp+Ll++L+  +  + pps+R+T+ g
  Zpz_sc00387.1.g00160.1.sm.mk 235 RL--FRAslikFHEVSPWFALPNALANAAIAQAAARGvepRPIHVVDLGVSHGVQWPTLLESLTRLSgtRVPPSIRLTVAG 313
                                   33..3335589**********************998778899*********************988755669********9 PP

                          GRAS 149 spesg......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223
                                   + ++        +         L ++A+++++++ +    a +le++  +++ + pgEal+V+l+++l ++       ++e
  Zpz_sc00387.1.g00160.1.sm.mk 314 PTATPqvvpfsLSPPGYDFSPHLLRYAKSINLQLAIGR--AASLESV--HSF-TTPGEALVVCLQFHLGHVA------ADE 383
                                   9665578788766677889999*************998..3444444..666.779*************998......556 PP

                          GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacega 303
                                   r+++Lk v++l+P++vv++e +a  ++++ + +f+  le+ + +++s++a +  ++ +er+ +E+e  g ++   va eg+
  Zpz_sc00387.1.g00160.1.sm.mk 384 RTDILKKVRGLNPELVVLSELDAV-GDGTVAGEFAARLEMLWRFLESTSAAFKGKDgDERRLLEAE-AGTSVAAGVAGEGR 462
                                   899****************99975.6999*******************888877776999999999.9***********99 PP

                          GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374
                                   e          Wr+r+ +aGF++++++++a+++ak+llrk++ +++++    ++ g++ l Wk++p+ ++S Wr
  Zpz_sc00387.1.g00160.1.sm.mk 463 E---------AWRDRMAAAGFEEAAFDDEAVESAKSLLRKYDgGWEMSAPaaSSAGAVALRWKGQPVSFCSLWR 527
                                   8.........9*******************************55554443546678888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.848127504IPR005202Transcription factor GRAS
PfamPF035149.7E-58154527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MHASSCKLVY MKAMNCREQE QQELAATTSN NGLDWLDDSI SFLTADIDFG GWWDTTPAEA  60
QQDDISSVVA QTLSPPAPLA TTSSPLAQAS SSTASPAVSS PSEPSSKKRK SPVHRASGQG  120
GSNQRRRAEQ DRAGGKKGGA KGGAGSDRDM RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG  180
ELASFSGDAN HRLAAHGLRA LLRRLPAAVG VAAAATVRVP PCVCPTPAFV AAEQRLFRAS  240
LIKFHEVSPW FALPNALANA AIAQAAARGV EPRPIHVVDL GVSHGVQWPT LLESLTRLSG  300
TRVPPSIRLT VAGPTATPQV VPFSLSPPGY DFSPHLLRYA KSINLQLAIG RAASLESVHS  360
FTTPGEALVV CLQFHLGHVA ADERTDILKK VRGLNPELVV LSELDAVGDG TVAGEFAARL  420
EMLWRFLEST SAAFKGKDGD ERRLLEAEAG TSVAAGVAGE GREAWRDRMA AAGFEEAAFD  480
DEAVESAKSL LRKYDGGWEM SAPAASSAGA VALRWKGQPV SFCSLWRSAC NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-2715152785473Protein SHORT-ROOT
5b3h_B1e-2715152731419Protein SHORT-ROOT
5b3h_E1e-2715152731419Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00387.1.g00160.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A1E5VYC70.0A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRINGGRMZM2G110067_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-73GRAS family protein