PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00389.1.g00270.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 1414aa    MW: 153381 Da    PI: 6.9101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00389.1.g00270.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12670716455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Zpz_sc00389.1.g00270.1.am.mk 670 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 716
                                   799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-49265450IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831666715IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-18669731IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-14669720No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17670728IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9670716IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16672721IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.25.10.101.6E-688831384IPR011989Armadillo-like helical
SuperFamilySSF483714.48E-748891386IPR016024Armadillo-type fold
PfamPF038108.0E-13909984IPR001494Importin-beta, N-terminal domain
SMARTSM009134.6E-10909985IPR001494Importin-beta, N-terminal domain
PROSITE profilePS5016618.487909985IPR001494Importin-beta, N-terminal domain
PfamPF085062.9E-4410431180IPR013713Exportin/Importin, Cse1-like
PfamPF085062.3E-7011941380IPR013713Exportin/Importin, Cse1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0016020Cellular Componentmembrane
GO:0008536Molecular FunctionRan GTPase binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1414 aa     Download sequence    Send to blast
MDPGKSRDTC PARAHAEDIL LRYKARRAEP SRADREGVHF TCSTPTSTWK GAARLGGSQP  60
GSKCRKEGAL CNPRRRPPIR IPPILPPPSL SPRPHPQDTT TGSVWSRAPE IHSRIREPPA  120
PSALIPCIRR HPRTHGVLSP CPGARLHTAG RDLATRLALD SAAPASIRAQ GPQSGEKLTA  180
CLLRGLIVGI SDCCCTVGFG TRSIMVMKME IEDDAAIGGG TGGIWTEEDR ALGAAVLGAD  240
AFSYLTKGGG AISQGLVSAS LSVDMQNKLQ ELVESDRPGA GWNYAIYWQL SRTKSGDLVL  300
GWGDGSCREP RDGEVGAAAS AGNDDTKQRM RKRVLQRLHI AFGGVDEEDY ALGIDQVTDT  360
EMFFLASMYF AFPRRTGGPG QVFAAGIPLW IPNSERKVYP TNYCYRGFLA DAAGFRTIVL  420
VPFEGGVLEL GSMQHIAESS DAIQNIRSVF SGTSNNKAAA QKPEGNGPAA TERSPSLAKI  480
FGKDLNLGRP SAGPVAGVSK VDERSWEQRS AAGGGSLLPN VQKGLQNFSW SQARGLNSHQ  540
QKFGNGVLIV SNEAAQRSNG ATDNSSATQF QLQKVLPPQK LQLQKLPQIQ KTPPTVNQQQ  600
LQPQAPRQID FSTGSSSKAG VLVTRTSGLD GESAEVDGLC KEEGPAPAVE DRRPRKRGRK  660
PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLGDAIT YITDLQKKLK  720
EMETERERFL ESGLVGGMPR PEVDIQVVQD EVLVRVMSPM ENHPVKRVFQ AFEDAEVRIG  780
ESKVTGNNGM VVHSFTIKCP GSEQQTREKV IAAIEAVGQS AQAGSPTPSF HFLVESPNQS  840
FPLSSILLDL DTVVGGGGFQ KPYLPTPDPP LQRCQIGSLP MEVPPEMLDA LAGWFAQSLS  900
PDAAARRAAE QSLSNAAASP GFALALLALS ASPRHDLQAR LASSVHFKNL LRRRWPKPDA  960
DDAADLLTAS DCAIIKAHLL QLLLTAPPLI QAQLSEALAA AAASDFPSKW ESLLPSIVSS  1020
LATALAAGDV VATNSLLSAA ASLFSRFRNA FDNNALRLDL KYCLDNFAAP LLEVFLSASR  1080
RLQASAANPP ELRPVFDCLR LSCEIFYSLN SIDLPEFFED HMNEWMTGFR AFLTTTYPPP  1140
VEADGAPDLL RAAVCDNLQL YMEKYEEEFR GYLQEFVEAT ASPTRGQLAV TAISPEAMKQ  1200
ICDSVVVPNL RLRDDDEELF EGNWVEYVRR DSEGSDADTL RRAACRLLRG LAANYRGQVA  1260
ALVSAQVQQM LAAYAADRTN NWKEKDAAIF LVISLMQKPG ATGGGTPVVD MESFFTSVIV  1320
PELQAPDWQS EPMLKATVLR FLKEFKDQIP KATAVALLPS VVRFLSHESN VVHSYAATFI  1380
ENLLMIKDAV PVPAMPLGTD HHAFLPWSVC CEHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z3h_A2e-7688813954535Importin alpha re-exporter
1z3h_B2e-7688813954535Importin alpha re-exporter
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1651659RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00389.1.g00270.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.36e-66bHLH family protein