PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00394.1.g00210.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 439aa    MW: 47783.5 Da    PI: 8.5465
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00394.1.g00210.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.93.3e-2374173190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvk 69 
                                     +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e+kk+          ++ +  + + +rtgC a+l++k
  Zpz_sc00394.1.g00210.1.sm.mkhc  74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQESKKSqdesgagggtSSPAPPRCPDSRTGCLASLTIK 151
                                     6*****************99997666.******************998888888886666666889************* PP

                            FAR1  70 kek.dgkwevtkleleHnHela 90 
                                     +    + ++vt+++ eHnH+la
  Zpz_sc00394.1.g00210.1.sm.mkhc 152 LIPsANAFRVTDFVAEHNHPLA 173
                                     **9999**************97 PP
2FAR169.58.3e-22221320290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklk 67 
                                     fYn+YA+++GFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a+++
  Zpz_sc00394.1.g00210.1.sm.mkhc 221 FYNRYAEHIGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgvvaisangaagsAGTPRPGPPPTRTGCQARMV 297
                                     9*************9976665..999****************9999********999876777778899********** PP

                            FAR1  68 vkkekdgkwevtkleleHnHela 90 
                                     +k +   +++v+k+  eHnH+la
  Zpz_sc00394.1.g00210.1.sm.mkhc 298 IKITPCRTYRVAKFFPEHNHPLA 320
                                     *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-2074173IPR004330FAR1 DNA binding domain
PfamPF031019.6E-19221320IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSAAPDPSHL SGDSSPSSPS SYGSSSPSSF GAADPAATNL AQEASASAAG DEADASPTSP  60
HVGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQESKKSQ  120
DESGAGGGTS SPAPPRCPDS RTGCLASLTI KLIPSANAFR VTDFVAEHNH PLASAAPAVS  180
LALLPPSSSR HSIAAAASLP DPKDGPHPDM HFETEEDAYV FYNRYAEHIG FSVRRSYKKR  240
KRGVIVSRIF VCSREGVSDR AKQEGVVAIS ANGAAGSAGT PRPGPPPTRT GCQARMVIKI  300
TPCRTYRVAK FFPEHNHPLA NPDSVHKLRR YEAILDEHRS KKLHADVDGS QVTLIWEIML  360
LLQAVKQFLL EETNILNIQH KQEEFLRQQM RATWPGDSSP YRTNEFGSKV GMPCSVSMQP  420
STDRESSKPC WFVEIPTET
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00394.1.g00210.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804639.11e-177protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025804640.11e-177protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7EWC71e-176A0A2T7EWC7_9POAL; Uncharacterized protein
STRINGPavir.Ba00914.1.p1e-179(Panicum virgatum)
STRINGPavir.J10702.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-13FAR1 family protein