PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00399.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 131aa    MW: 14165.1 Da    PI: 7.0283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00399.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-052446123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C++ F ++  L  H++ H
  Zpz_sc00399.1.g00170.1.am.mk 24 FVCTYCDRKFCSSQALGGHQNAH 46
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-81967No hitNo description
PROSITE profilePS5015711.0322451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEEEELNLEL TLLHRSPAEP FGFFVCTYCD RKFCSSQALG GHQNAHKYER SLAKRRREIA  60
AAMRAHAPAS ATGNLDAGVV VAAAGNQRVR SDAKQHAAVA PLPALLMTSN KEMPSESSID  120
CGDGLDLSLR L
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00399.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632821e-40EU963282.1 Zea mays clone 260368 hypothetical protein mRNA, complete cds.
GenBankEU9724021e-40EU972402.1 Zea mays clone 380740 zinc finger protein 3 mRNA, complete cds.
GenBankEU9731301e-40EU973130.1 Zea mays clone 393764 zinc finger protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980326.12e-37zinc finger protein 2
TrEMBLA0A0A9HWN68e-46A0A0A9HWN6_ARUDO; Uncharacterized protein
STRINGSi028062m8e-37(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-11zinc-finger protein 1