PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00418.1.g00280.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 578aa    MW: 63274.1 Da    PI: 4.5561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00418.1.g00280.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49171531128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya........ 69 
                                     l+pGfrFhPtdeelv++yL+++++g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +        
  Zpz_sc00418.1.g00280.1.am.mkhc  17 LAPGFRFHPTDEELVSYYLRRRIAGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKITgagaggrg 94 
                                     579***************************.99***************5448999999***********9977777766 PP

                             NAM  70 .tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       g+r+nrat +gyWk+tgkd+ev++ +g+ vg+kktLvf++grapkg +t+Wvmheyrl
  Zpz_sc00418.1.g00280.1.am.mkhc  95 gPGNRTNRATPQGYWKTTGKDREVFH-RGKPVGMKKTLVFHNGRAPKGARTNWVMHEYRL 153
                                     5567**********************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-5214159IPR003441NAC domain
PROSITE profilePS5100550.36617173IPR003441NAC domain
PfamPF023655.7E-2719153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSNQSLLDSS PPAEVPLAPG FRFHPTDEEL VSYYLRRRIA GRRLRVDAIA EVDLYRLEPW  60
DLPSLSRIRS RDAQWYFFAR LDRKITGAGA GGRGGPGNRT NRATPQGYWK TTGKDREVFH  120
RGKPVGMKKT LVFHNGRAPK GARTNWVMHE YRLLDADGPQ NGAQYGAPYM EEEWEEDDDA  180
IEKGAIIGAS TKVAATSDTA DEELNEEEEN GDCKTSELAQ ADEILNLPVV AAPQAQGLNE  240
TSDGSCADDA IFLEEILSST VNVENITGPD GQNATDDNFS AADFSGCLTK DDGYIENDFK  300
YDMLGSGEGS DYQLPEMSNF AQKGDYKDES ACDGISKTSI TNGQYGASSS GSHDDLYPYD  360
AVPVDGPAGK TFGKHLVNLL DSIPTKTALA EENPPATRKS VLNAVSPSSI RVTAGIIQLC  420
GLNFTAFEHG PLQKNGDFSL LLSFTMDSDV ASKSISFEPA TRVGAVPMVM RSGLYLFFVS  480
AMILMLSYKR FDFFDESEKL LKRGLAPNRE VGSNQDSTER RAINGESERP ESGERDYRRV  540
EKSCLAGRYC NGSARRRCFT AELTGLLSVK GAEEDDSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-421315311140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00418.1.g00280.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0641331e-145BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds.
GenBankBT0675811e-145BT067581.1 Zea mays full-length cDNA clone ZM_BFc0097N06 mRNA, complete cds.
GenBankEU9759361e-145EU975936.1 Zea mays clone 505923 NAC domain-containing protein 78 mRNA, complete cds.
GenBankKJ7269851e-145KJ726985.1 Zea mays clone pUT3686 NAC transcription factor (NAC26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677410.11e-165NAC domain-containing protein 78 isoform X1
TrEMBLA0A0E0NN051e-152A0A0E0NN05_ORYRU; Uncharacterized protein
STRINGBRADI3G56080.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7351822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.16e-52NAC domain containing protein 53