PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00422.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 281aa    MW: 32171.6 Da    PI: 10.3532
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00422.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.8e-21153208156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Zpz_sc00422.1.g00220.1.am.mk 153 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 208
                                   678899***********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-21139210IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-23147215IPR009057Homeodomain-like
PROSITE profilePS5007118.091150210IPR001356Homeobox domain
SMARTSM003891.2E-19151214IPR001356Homeobox domain
CDDcd000861.85E-17153211No hitNo description
PfamPF000468.2E-19153208IPR001356Homeobox domain
PRINTSPR000318.7E-5181190IPR000047Helix-turn-helix motif
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
PRINTSPR000318.7E-5190206IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MHRESAVKTA MLNEANAKRQ NLLCVRAAKG RHQTGGGHGH GRRESRDTLV CPASACPFEG  60
EGMVGYRVQP ALPVGRRRKE VLGRIHLHTR KRSNANTRSE VSVHILLPAS DCARSNRPSA  120
RRHGRGLRVR GVRAAMDFDD DVTEGGSDSK RRKKRYHRHT PRQIQQLEAM FKECPHPDEN  180
QRMQLSRELG LEPRQIKFWF QNRRTQMKAQ HERADNCFLR AENDKIRCEN IVMREALCNV  240
ICPSCGAPPV ADDYYDEQKL RMENARLKEE ASHCYPPPLI A
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00422.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7285231e-158KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15929915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.18e-63homeodomain GLABROUS 11