PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00422.1.g00300.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 496aa    MW: 53613.7 Da    PI: 6.3375
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00422.1.g00300.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30294353159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++ +tYeg+Hnh+
  Zpz_sc00422.1.g00300.1.sm.mkhc 294 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILATTYEGTHNHP 353
                                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31279355IPR003657WRKY domain
SuperFamilySSF1182904.05E-27287355IPR003657WRKY domain
PROSITE profilePS5081128.036289355IPR003657WRKY domain
SMARTSM007746.9E-37294354IPR003657WRKY domain
PfamPF031068.4E-27295353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSSKKKRVAI DLSLDVEKTE EDRSSGDDGD GSFKDGEMDK EDGQLERHGE ALKEETNEEK  60
KVAEVVVDQG GKGSKEEIKF RTQPGEMVEE KHSDDKSDGV ETRAKGKHVV ENARNGGDDN  120
HTNMGQEDEV SAMHEEMEKM KEENRMLRQV VDRTVRDFYE LQMKEPEPEV FLSLGAAAGF  180
REPNLKLKEQ ATTRRPSLSS DDTDDGKEAN LGLSLSLGAP YEEKLEAGGH DHDGATVDGD  240
GKVTGNNAFL ESSKLGPPPA AGDLAAAGIK SQSVNPANRK TRVSVRVRCQ GPTMNDGCQW  300
RKYGQKVAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILATTYEGTH NHPLPVGATA  360
MASTTSGAAA TLMLFSSTNL PSSISDAGGA TASPPYLSPY LLNSASHHSA ASPLLSTPPS  420
MSSGASGLQH LNLFERSSML AQQAPLFSKY TPDRPRVRTE LVAWRGVGGG GGARDRFGAP  480
VPAMRRRLHC QIMSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21281357176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00422.1.g00300.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632477e-76AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.11e-150probable WRKY transcription factor 9
TrEMBLK3YR971e-149K3YR97_SETIT; Uncharacterized protein
STRINGSi016791m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-52WRKY DNA-binding protein 9