PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00425.1.g00080.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 249aa    MW: 27894.1 Da    PI: 7.319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00425.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.92.6e-3038128187
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+k ltpsdv+k++rlv+pk++ae++    g ++e++  l++ede+g+ W+++++y+ +s++yvltkGW+++vk+++L++g
  Zpz_sc00425.1.g00080.1.sm.mk  38 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSSEKGLILSFEDETGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKNLDAG 118
                                   99****************************88889999******************************************* PP

                                   -EEEEEE-SS CS
                            B3  78 DfvvFkldgr 87 
                                   D+v F+ +g 
  Zpz_sc00425.1.g00080.1.sm.mk 119 DVVHFEGMGG 128
                                   ******7654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3933149IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-2836124No hitNo description
SuperFamilySSF1019363.4E-2836128IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-2738140IPR003340B3 DNA binding domain
SMARTSM010193.7E-2138142IPR003340B3 DNA binding domain
PROSITE profilePS5086313.67638142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MALNHTPISQ EHPQAWPWGV AMYTNLHYHH YYERERLFEK PLTPSDVGKL NRLVIPKQHA  60
ERYFPLSGDS SEKGLILSFE DETGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKNLDAGDV  120
VHFEGMGGFG IGDRMFIGFR RRGESATPAA APLPAVRVAA AAQSAGEQQP PWSPVCYSTS  180
GLYPNSPANS YAYRRSVDHD PSNTPHAGES SAASVPSRRL RLFGVNLDCG PEPEAEAPTF  240
PEPNYWSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-50331423113B3 domain-containing transcription factor NGA1
5os9_B1e-50331423113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00425.1.g00080.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827829.11e-134B3 domain-containing protein Os11g0156000-like isoform X1
SwissprotQ53QI01e-115Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A2T7CKD21e-133A0A2T7CKD2_9POAL; Uncharacterized protein
STRINGPavir.Hb01814.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.14e-56B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]