PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00425.1.g00380.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 175aa    MW: 19915.9 Da    PI: 5.329
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00425.1.g00380.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix552.1e-173195155
                        trihelix  1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwe 55
                                    +Wt+++v++Li+a+++++e+++++           +kk++W+++sk+m erg+++sp+qC++k +
  Zpz_sc00425.1.g00380.1.am.mkhc 31 KWTDSMVKLLITAVSYTGEDYGADLgggrrnfsimQKKGKWKAISKVMGERGCHVSPQQCEDKCK 95
                                    7*********************9744455677788***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-122996No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSDDEEHELT EDANENPSGK GKKSSAWHRM KWTDSMVKLL ITAVSYTGED YGADLGGGRR  60
NFSIMQKKGK WKAISKVMGE RGCHVSPQQC EDKCKEDHDS RRDVFGDGDE DDQSADSDYY  120
EDDEEHHAVH TNMREPSMLK RMRHSDMALV NSSPHEGSAR NLFCIRMRFA GDLVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00425.1.g00380.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143969.21e-50uncharacterized protein LOC100276786
RefseqXP_020403187.11e-50uncharacterized protein LOC100276786 isoform X1
TrEMBLA0A1E5UTG17e-60A0A1E5UTG1_9POAL; Uncharacterized protein
STRINGSb05g003890.12e-49(Sorghum bicolor)
STRINGGRMZM2G126148_P022e-49(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4464833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-29sequence-specific DNA binding transcription factors