PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00444.1.g00210.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 415aa    MW: 44239.1 Da    PI: 9.6263
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00444.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.73.6e-31246339187
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL
  Zpz_sc00444.1.g00210.1.am.mk 246 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 326
                                   89*******************************5556799***************************************** PP

                                   -TT-EEEEEE-SS CS
                            B3  75 kegDfvvFkldgr 87 
                                   ++gD+v F+++ +
  Zpz_sc00444.1.g00210.1.am.mk 327 NAGDVVGFYRSAE 339
                                   *********6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.472105168IPR001471AP2/ERF domain
CDDcd000181.30E-12123168No hitNo description
SMARTSM003807.9E-10124174IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-10128168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-13132168IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-40239364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-31244341IPR015300DNA-binding pseudobarrel domain
CDDcd100177.69E-29244337No hitNo description
SMARTSM010197.7E-23246354IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493246355IPR003340B3 DNA binding domain
PfamPF023628.3E-28246339IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MLPSASICPR GLVTGLGGVV LASAETTTLA SPPTHRRGYI SPCIPRSPVH SIPTLQTSSF  60
SDRSIIEFVS SYLVVVHTHT LEMDSASSLV EDTGGGGGGG TSTDKLRALA AVVAVGPPLE  120
RVGSGASGIY ERHQRVWLGT FAGEADAARA YDVAAQRFRG RDAVTNFRPL ADADPNAAAE  180
LRFLASRSKA EVVDMLRKHT YFDELAQNRR AFAASAPTTT SSPLAGDHAA GSSLRPSPVA  240
AREHLFDKTV TPSDVGKLNR LVIPKQHAEK HFPLQLPSAG GESKGVLLNF EDAGGKVWRF  300
RYSYWNSSQS YVLTKGWSRF VKEKGLNAGD VVGFYRSAES DVADSKLFID CKLRPNNTTA  360
ASMATPVTAV RLFGVDLLTA PTPESAMAGC KRARDFAATP PQAVFKKPLV ELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-512393551114B3 domain-containing transcription factor NGA1
5os9_B3e-512393551114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00444.1.g00210.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982980.0FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.11e-158AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ8RZX91e-153Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A3L6FN241e-153A0A3L6FN24_MAIZE; AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb02845.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.27e-84related to ABI3/VP1 2