PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00448.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 481aa    MW: 53108.8 Da    PI: 4.9208
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00448.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.6e-34261172101
                                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
                    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                                     Fl k+ye+++d++++e++sws ++  sfvv++++efa ++Lp+yFkhsn++SF+RQLn+YgF+k++ e+         w
  Zpz_sc00448.1.g00090.1.sm.mkhc  26 FLLKTYEMVDDPSTDEVVSWSdASDASFVVWNSTEFAARLLPTYFKHSNLSSFIRQLNTYGFRKIDPER---------W 95 
                                     9********************66679****************************************999.........* PP

                                     EEEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  80 eFkhksFkkgkkellekikrkk 101
                                     eF+++ F kg+k+ll++i+r+k
  Zpz_sc00448.1.g00090.1.sm.mkhc  96 EFANEFFVKGQKHLLKNIHRRK 117
                                     ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.98E-3322116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3522116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5822116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEVAASGARG STAGGGGGGG GGPAPFLLKT YEMVDDPSTD EVVSWSDASD ASFVVWNSTE  60
FAARLLPTYF KHSNLSSFIR QLNTYGFRKI DPERWEFANE FFVKGQKHLL KNIHRRKPIH  120
SHSHQPGALP DNARASFEDE IDRLSREKAA LQAELWKFSQ QQSGATIQIE DLERRVLDME  180
QRQVKMLNFL QQASKNPQFV NKLVKMAETS PIFSDAYHKK RRLPGLDYGT ESTEITSFYD  240
DHSSTSRQEM GNLLNQHFSD KLKLGLCSAV AESNLITLST QSSHEDNGSA NGKLPDCDRV  300
SIECLPLVPQ MMELSDTGTS ICPSKSSCFT TAVIDEGLLP CQLNLTLASC SMDAERNQTP  360
NANGNSINQD QGTENPLVAA TTTPMEMDDG LSRHHDDSHQ RTPNDADSAA AMTTPRGNAQ  420
VSTEAPPAPP AVVNDKFWEQ FLTERPGCSE TEEASSTQRD PSRKQIEDTT NDRTDMQQLK  480
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-221711617129Heat shock factor protein 1
5d5v_B6e-221711617129Heat shock factor protein 1
5d5v_D6e-221711617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00448.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A0D9VG520.0A0A0D9VG52_9ORYZ; Uncharacterized protein
STRINGLPERR02G13860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-120HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]