PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00449.1.g00070.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRF

Protein Properties

Length: 235aa MW: 24828.3 Da PI: 4.343

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00449.1.g00070.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.4	1e-22	153	197	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e Zpz_sc00449.1.g00070.1.sm.mkhc 153 EPEPGRCRRTDGKKWRCWRSTIQNEKYCERHMHRGRKRPVQLVVE 197 69************************************9998875 PP
2	QLQ	53.5	7.1e-19	87	122	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Zpz_sc00449.1.g00070.1.sm.mkhc 87 AFTAMQLQELEQQSRVYQYMAARVPVPTHLIFPIWK 122 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-8	86	122	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.888	87	122	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.4E-12	87	121	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.049	153	197	IPR014977	WRC domain
Pfam	PF08879	2.1E-19	154	192	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAAEGEAANP AGGGSGGDSY PQEVVAAADE AAQGSGQEPA GEMANREGAD GGDGGGAEEK 60 DDGAYGDLVL VEGPEALAVE GLDKGAAFTA MQLQELEQQS RVYQYMAARV PVPTHLIFPI 120 WKNVTGASSE GAQKYPTLMG LATLCLDFGE DPEPEPGRCR RTDGKKWRCW RSTIQNEKYC 180 ERHMHRGRKR PVQLVVEDDE PDSASGSKTT PGKADDKSAN NMKLDVAAPA SVEST

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00449.1.g00070.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800926.1	1e-113	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-110	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A2S3H2A3	1e-111	A0A2S3H2A3_9POAL; Uncharacterized protein
STRING	Si030809m	1e-111	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-29	growth-regulating factor 5

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]